PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g020710.2.1
Common NameLOC101249098
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CPP
Protein Properties Length: 571aa    MW: 61985.1 Da    PI: 7.545
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g020710.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-14124163242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         + k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  Solyc07g020710.2.1 124 KPKQCNCKHSRCLKLYCECFASGIFCDG-CNCANCHNNVEN 163
                         5699************************.********9875 PP
2TCR50.93e-16208247140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  Solyc07g020710.2.1 208 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFE 247
                         589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.5E-16123163IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.562124248IPR005172CRC domain
PfamPF036389.4E-12126160IPR005172CRC domain
SMARTSM011141.6E-19208249IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12211246IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEKIEEGHFP PKKAESELAS VQVETDNPAK KLARQLDFTG GVPGQALTVS LQEHANQIIQ  60
PEVIKSSQLT VSMKSTQVIS PQPQLQQHIL LMPMQQAPVL PPQPLIRPLS MQSSSEAKDG  120
TPKKPKQCNC KHSRCLKLYC ECFASGIFCD GCNCANCHNN VENEASREEA VEATLERNPN  180
AFRPKIASSP HGTREEREEA GDGLVLPKHN KGCHCKKSGC LKKYCECFQA NILCSENCRC  240
MDCKNFEGNE ERQAHFHGYH ANNMAYLQQT ANVAITDAIG SSGYGSPPVN KNRKPQELFS  300
GSMIKDPVHR LGQFQQENQI KASVPPSLLS SIPSTRVSNA AALGPPKPTY RSLLADIIQN  360
HDIKELCSVL IVYAQEAAKI LSDEKDASLK QAKHHRKASY PSSGVGKVVP DDCSTGIQAE  420
SIRGDESRLD GADVSAERPI SPGTLALMCD EQDTTFTAAA APPNDLTSLS NNTSSQPPHG  480
QGRAEIYPEL ERIVLAQTRD CLKKLITLGE IKEKKCSLMV RDTDSGRQNN VSSNGVVNTV  540
PPPPPPQQKV DSGTTAANTT RPKVHPPDGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3012225710132Protein lin-54 homolog
5fd3_B3e-3012225710132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.51780.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g020710.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134470.0Lycopersicon esculentum clone 132102R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242935.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-162TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A3Q7H6K30.0A0A3Q7H6K3_SOLLC; Uncharacterized protein
STRINGSolyc07g020710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-162Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]