PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g009560.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 397aa MW: 44388.1 Da PI: 4.6173

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g009560.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.6	8.7e-11	84	112	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 A Pk++ elm+++ L+ ++++SHLQkYRl Solyc07g009560.1.1 84 ACPKKVHELMNMPELSKKQIASHLQKYRL 112 89**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	3.9E-9	4	82	No hit	No description
SuperFamily	SSF52172	2.42E-7	6	81	IPR011006	CheY-like superfamily
CDD	cd00156	1.46E-5	10	81	No hit	No description
SuperFamily	SSF46689	4.48E-5	83	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-9	84	112	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.4E-9	84	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MEVEKKGRIL VVDDINCHLT TIASLKYSQF EVMTVNSIEV AVGGLRSSGL SFDLLLTDIH 60 MLKMDVFQFQ QDIAKEFDIP ICYACPKKVH ELMNMPELSK KQIASHLQKY RLTLDKKPNP 120 KVVLDSSKTT SGNANQLSIT TDNISALAPQ VMTKNLNNAG PDTEPDLRNF VSDYEKDRNF 180 SNILSRHLNQ KPYKMQGNYE GINADGISLQ LGNVLPNSNL EQGKYASITA EERPLHSSTV 240 SPNLSLQQEI YGGVTTEDAL FDHLDVPSNS EIESGDYESF TAEDWSFLNS FFLDHELEQA 300 IHEGLTTKEG SLQLCNDPPI TTLEDLAPDE YNVECANGFW DNAKVVQVGV GRKSMMCAQP 360 KEIFDFVWNF LLPNPAMMKR IGRGLFRNMK DGFDGE*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MEVEKKGRIL VVDDINCHLT TIASLKYSQF EVMTVNSIEV AVGGLRSSGL SFDLLLTDIH  60
MLKMDVFQFQ QDIAKEFDIP ICYACPKKVH ELMNMPELSK KQIASHLQKY RLTLDKKPNP  120
KVVLDSSKTT SGNANQLSIT TDNISALAPQ VMTKNLNNAG PDTEPDLRNF VSDYEKDRNF  180
SNILSRHLNQ KPYKMQGNYE GINADGISLQ LGNVLPNSNL EQGKYASITA EERPLHSSTV  240
SPNLSLQQEI YGGVTTEDAL FDHLDVPSNS EIESGDYESF TAEDWSFLNS FFLDHELEQA  300
IHEGLTTKEG SLQLCNDPPI TTLEDLAPDE YNVECANGFW DNAKVVQVGV GRKSMMCAQP  360
KEIFDFVWNF LLPNPAMMKR IGRGLFRNMK DGFDGE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g009560.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253659	1e-127	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-33k4 map 7, complete sequence
GenBank	AC253666	1e-127	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48d7 map 7, complete sequence
GenBank	AC253989	1e-127	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-46l4 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027774110.1	1e-153	two-component response regulator ARR14-like
STRING	Solyc07g009560.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15814	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	1e-08	response regulator 1

Link Out ? help Back to Top
Phytozome	Solyc07g009560.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]