PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g006880.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 164aa MW: 18141.8 Da PI: 8.8539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g006880.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Solyc07g006880.1.1 40 FSCNYCRRKFYSSQALGGHQNAH 62 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-6	37	67	No hit	No description
PROSITE profile	PS50157	11.053	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSYEPNTALN LSLSRNDLLF DQSSSSSSST PLSPVEPRVF SCNYCRRKFY SSQALGGHQN 60 AHKLERTLAK KSRELSSTLR GPHSSWSNHS NSNNNSNSNN HCSLSPSGPS HTSHGHGHGA 120 RFVTNNDLIS YGRREMMMSY ESMKNGHESV QEDFGHLDLS LRL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10451	0.0	flower\| fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g006880.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315357.1	1e-115	zinc finger transcription factor SlZFP2
TrEMBL	A0A3Q7H6R1	1e-114	A0A3Q7H6R1_SOLLC; Uncharacterized protein
STRING	Solyc07g006880.1.1	1e-115	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8876	21	28
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	8e-23	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Solyc07g006880.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]