PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g083980.1.1
Common NameLOC101259164
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 478aa    MW: 52944.9 Da    PI: 7.0597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g083980.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13331377455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Solyc06g083980.1.1 331 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 377
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-4249227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.58E-18327392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-14330381No hitNo description
PfamPF000102.1E-10331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17331395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAEKFFLKGE DKVNMEGVLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ ALCKIVEGSD  60
WTYAIYWQVA KSKSGKSALI WGDGHCRETK IGQGEGANDS AHQKMMDGNK KKMVLQKIHT  120
CFGGSEDDNI AAKLESVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WGSDLKGCLE  180
HFQSRSYLAK LARFETLVFV PLKSGVVELG SVKSIPEDQN LIQMVKTSVV VSNPPQPKAN  240
TKIFGRELSL GGAKSGPISI NFSPKVEEEL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE  300
GEGKLYKEEL DERKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  360
DKASLLGDAI AYITDLQARI RVLDAEKEMV GDKQKQQVIL EIDFHQRQDD AVVRVGCPLN  420
AHPVSRVLKT FQEHQVVAQE SNVSLTENGE LVHMFSIRAP GPAAEDLKEK LTAALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27325402278Transcription factor MYC2
5gnj_B1e-27325402278Transcription factor MYC2
5gnj_E1e-27325402278Transcription factor MYC2
5gnj_F1e-27325402278Transcription factor MYC2
5gnj_G1e-27325402278Transcription factor MYC2
5gnj_I1e-27325402278Transcription factor MYC2
5gnj_M1e-27325402278Transcription factor MYC2
5gnj_N1e-27325402278Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312320RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g083980.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242355.10.0transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLM1BS130.0M1BS13_SOLTU; Uncharacterized protein
STRINGSolyc06g083980.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-161bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]