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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc06g072890.1.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
WOX |
| Protein Properties |
Length: 265aa MW: 29126.7 Da PI: 5.2842 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc06g072890.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 49.5 | 7.1e-16 | 37 | 97 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++
Solyc06g072890.1.1 37 RSRWNPKPEQIVILESIFNSgMVNPRKDETVRIRKMLeqfgAVGDANVFYWFQNRRSRSRR 97
89*****************99*************************************997 PP
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| 2 | Wus_type_Homeobox | 107.5 | 7.9e-35 | 36 | 99 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+r+RW+P+peQi iLe++++sG+++P k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
Solyc06g072890.1.1 36 VRSRWNPKPEQIVILESIFNSGMVNPRKDETVRIRKMLEQFGAVGDANVFYWFQNRRSRSRRRQ 99
689***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MIIPFFDVIL EFYLFHSAMD DDSSSSSQSC ERNETVRSRW NPKPEQIVIL ESIFNSGMVN 60
PRKDETVRIR KMLEQFGAVG DANVFYWFQN RRSRSRRRQR QIQASLSAVS NSNEEQSARS 120
SDGGAIQFQT NFVPSSVSSS SSSLGGVVGN ANDGLFLFSG PMGIDQNSSI TSILCSPTDN 180
SNLNCSSSGF ITVFINGVAA QVPRGPLDMK AMFGPEDLVL YHSSGVPLPV NEYGFVVQSL 240
QHGESYFLAC PCILLYTHVT LYIL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Hu X,Xu L
Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
Plant Physiol., 2016. 172(4): p. 2363-2373
[PMID:27784768] - Sheng L, et al.
Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
Development, 2017. 144(17): p. 3126-3133
[PMID:28743799] - Liu J, et al.
The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
Plant Cell Physiol., 2018. 59(4): p. 734-743
[PMID:29361138] - Baesso B, et al.
Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
Plant Biol (Stuttg), 2018. 20(3): p. 426-432
[PMID:29450949]
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