PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g054600.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 187aa MW: 20703.9 Da PI: 8.363 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.2e-10 | 10 | 30 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rtG Ck+G++Ck++H++ Solyc06g054600.2.1 10 QYYMRTGMCKFGASCKYHHPR 30 59*****************96 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 41 | 64 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tG+Ck+G +CkF+H++ Solyc06g054600.2.1 41 KECAHYMKTGHCKFGITCKFNHPQ 64 68********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.21 | 8 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.418 | 10 | 31 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.9E-7 | 10 | 30 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 11 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-6 | 39 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 39 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 41 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 43 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MLVVPGYDLQ YYMRTGMCKF GASCKYHHPR QGEESPSLNE KECAHYMKTG HCKFGITCKF 60 NHPQPAGVQV PALAAGPFPL PAAVPPPATY PELQPLPPVD SAEQYGMVTG FYLSSAIPNY 120 SICSWSRSSA MPNFSLCSWS RSSLWSYTNI CFSTCLRKPI CISYCFSWCF KQHPGWTCIS 180 GKTWAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g054600.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243712 | 8e-26 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025887306.1 | 4e-59 | zinc finger CCCH domain-containing protein 58 | ||||
Swissprot | Q6NPN3 | 3e-22 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | K4C6E6 | 1e-135 | K4C6E6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g054600.2.1 | 1e-136 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15985 | 5 | 6 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 9e-22 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g054600.2.1 |
Publications ? help Back to Top | |||
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