PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g016750.2.1

Common Name

LOC101265135

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 447aa MW: 51510.8 Da PI: 8.8585

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g016750.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	24.9	4.4e-08	342	430	11	99
NF-YC 11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivprd 99 +++++ + ++P r+++i+k ++ +++m+ ea l+ ka e f le+ r + +r+ + + ++++v++ fdfl d +p++ Solyc06g016750.2.1 342 DEKSESALYQFPHNRVHRIIKNENtEIRML-HEATFLVNKATEKF-LEIFCREAYSCSFLDRKsYVGYNHLSSVVSKRPRFDFLSDFIPQK 430 4555666789*********876266665.79*******9.68888877666666665168899*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.0E-13	333	429	IPR009072	Histone-fold
Pfam	PF00808	3.5E-8	351	414	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.7E-16	352	429	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MPKKSNGNSD NHDRDEPEDF VIPSSSAESQ DADETDEESD DVQNVHKEYV SDTDKEDEEE 60 EEEEKVESSK VGNTNSRGRE EDLEVQKKVY RRKGKKIVDG CGLSESENLK IYTRKKKMIE 120 KEKEVEEKER NVGAKIATSK NDYSEKNMNA KKEDKVNEGK TAKNNGDSSR GGKNEKRNNK 180 DERREVEGET KLAKKGKSNG GSSHGSVIKK EENKKKKRTD ERERERERER ERERERERQS 240 AKKAKINGDS SQLKKEEKNM KKTQNKKEGD EEAEENLVKK SNSNGVASPA KKEKMKREKE 300 KKGKTNNGKV KDEAISNGTT KKNEEKKLKA KRKREDDEEE EDEKSESALY QFPHNRVHRI 360 IKNENTEIRM LHEATFLVNK ATEKFLEIFC REAYSCSFLD RKSYVGYNHL SSVVSKRPRF 420 DFLSDFIPQK VRAEDALAEI PKSAET*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MPKKSNGNSD NHDRDEPEDF VIPSSSAESQ DADETDEESD DVQNVHKEYV SDTDKEDEEE  60
EEEEKVESSK VGNTNSRGRE EDLEVQKKVY RRKGKKIVDG CGLSESENLK IYTRKKKMIE  120
KEKEVEEKER NVGAKIATSK NDYSEKNMNA KKEDKVNEGK TAKNNGDSSR GGKNEKRNNK  180
DERREVEGET KLAKKGKSNG GSSHGSVIKK EENKKKKRTD ERERERERER ERERERERQS  240
AKKAKINGDS SQLKKEEKNM KKTQNKKEGD EEAEENLVKK SNSNGVASPA KKEKMKREKE  300
KKGKTNNGKV KDEAISNGTT KKNEEKKLKA KRKREDDEEE EDEKSESALY QFPHNRVHRI  360
IKNENTEIRM LHEATFLVNK ATEKFLEIFC REAYSCSFLD RKSYVGYNHL SSVVSKRPRF  420
DFLSDFIPQK VRAEDALAEI PKSAET*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	237	RERERERERER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g016750.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240677.1	0.0	histone-lysine N-methyltransferase, H3 lysine-79 specific isoform X1
TrEMBL	A0A3Q7GSX9	0.0	A0A3Q7GSX9_SOLLC; Uncharacterized protein
STRING	Solyc06g016750.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15
Representative plant	OGRP8670	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-26	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Solyc06g016750.2.1
Entrez Gene	101265135

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]