PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g008030.2.1
Common NameLOC101260141
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 513aa    MW: 56181.2 Da    PI: 5.6676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g008030.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16307353455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Solyc06g008030.2.1 307 VHNLSERKRRDRINEKMKALQELIPCC-----NKSDKASMLDEAIEYLKSLQ 353
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20301370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.241303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-17306357No hitNo description
PfamPF000108.9E-14307353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-20307361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-19309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MNYCVVPDFK MDDDYYDIPS AIFNKKSTIA DEEIMELVWQ NGGVIMQSQN QRSVRKSNLF  60
PEQSAVEQTV AVSAPLYMQE DEMNSWLQSP LDDSSFDDFL NTTPSCDAVT SAAAAPPGEI  120
GTSKVEIRPP LVPPCSRPIR CTEGELPHRL QNFGHFSRLS GEAVLRNGTT SSSGHSVRAS  180
TIVDSNETPV AARVSENVTP VTAMNVRGRE LTATSMATTS GGREVTMACE LALTASTRGS  240
GGSVSARAGP PQPSHTEADT AAYDRKRKSR ESDDNEGQSE DVEYEFADAR KQVRSSTSAK  300
KSRAAEVHNL SERKRRDRIN EKMKALQELI PCCNKSDKAS MLDEAIEYLK SLQLQVQMMA  360
TGCSMVPMMY PGIPQYMPTM GMNMSMGMDM KMGRNRPLIS YPPLMPGPAM QNAAAAAQMA  420
PQYPLPAYHL PPFPAPDPSR IPVANQPNSH VGHNISQPRL PNFSDPYYQY FGLQQAQLML  480
PQNQEVEQLS SSKLNSCIEG SRGNHQSGEH TI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316ERKRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.157090.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g008030.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321805.10.0transcription factor PIF1 isoform X1
TrEMBLA0A3Q7GMS10.0A0A3Q7GMS1_SOLLC; Uncharacterized protein
STRINGSolyc06g008030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-51phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]