PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g049860.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 102aa MW: 11854.5 Da PI: 10.8325 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 46.7 | 7.1e-15 | 10 | 61 | 3 | 56 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 r++Wtp+ ++F ea+++LG ekAt ile m+v+ Lt+++v LQ+YR++ Solyc05g049860.1.1 10 RIKWTPNVNKKFNEAIRRLG--EKATAIPILEYMNVPQLTRKQVENRLQQYRVH 61 99*****************6..5566666***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-15 | 6 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.7E-10 | 7 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-12 | 10 | 62 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MEERKERRLR IKWTPNVNKK FNEAIRRLGE KATAIPILEY MNVPQLTRKQ VENRLQQYRV 60 HQLAQHASSS SSLVLANPPN VLNSHDELQH TCNNTFFSST R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g049860.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019069539.1 | 5e-70 | putative two-component response regulator ARR20 isoform X1 | ||||
TrEMBL | A0A3Q7HED4 | 1e-34 | A0A3Q7HED4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g049860.1.1 | 2e-69 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA28093 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.3 | 3e-10 | myb-related protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g049860.1.1 |
Publications ? help Back to Top | |||
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