PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CO-like

Protein Properties

Length: 420aa MW: 46262.6 Da PI: 4.7276

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g046040.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.6e-07	3	42	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C++++e ++ +C++++ lC +C ++ H+ H Solyc05g046040.1.1 3 PLCDLCGEVRAVVYCKSDSARLCLQCDDYVHSPnlisrrH 42 68****99*****************99425555555 PP
2	zf-B_box	17	1.2e-05	45	72	3	30
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCl 30 +C+++++++ + C d lCe C Solyc05g046040.1.1 45 SFICDKCNSQPSIVRCMDEAISLCERCD 72 679************************7 PP
3	CCT	62.9	9.8e-22	363	406	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RY+eK+ktR F K+irY+sRKa+A++R RvKGrFvk+ Solyc05g046040.1.1 363 RHEAKMRYNEKKKTRTFGKQIRYASRKARADTRRRVKGRFVKAG 406 899**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.072	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.40E-7	3	47	No hit	No description
Pfam	PF06203	1.1E-16	363	405	IPR010402	CCT domain
PROSITE profile	PS51017	14.624	363	405	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDPLCDLCGE VRAVVYCKSD SARLCLQCDD YVHSPNLISR RHSRSFICDK CNSQPSIVRC 60 MDEAISLCER CDWDGNGCIG TGHRLKKLNP YTGCPSPDEF TKMLSQVLEM PIGTDTNFGS 120 FGNSLGSSLS INENNSSLEN KVNEDSFVSS KLLASNYKFE AWSIPPEPNY LNSYQIDLAP 180 FSEGSGLSKQ DCPIKDLGLQ EGDDLSKGVD FDDVTLDFNC SYEILPDSRQ TGFSDENKEL 240 DCLVMEKNSS VTGSNNVETS HEATSSVQQE YMGLQSSQIS AAASSTNLLQ TMSANANCML 300 MNSTCNGSIG ALPFLPAPIH PSMSLSLSNI TGESCAEQDC GLSPGFLNEA PWDLSLENCP 360 QKRHEAKMRY NEKKKTRTFG KQIRYASRKA RADTRRRVKG RFVKAGEAYD YDPSETRDF*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDPLCDLCGE VRAVVYCKSD SARLCLQCDD YVHSPNLISR RHSRSFICDK CNSQPSIVRC  60
MDEAISLCER CDWDGNGCIG TGHRLKKLNP YTGCPSPDEF TKMLSQVLEM PIGTDTNFGS  120
FGNSLGSSLS INENNSSLEN KVNEDSFVSS KLLASNYKFE AWSIPPEPNY LNSYQIDLAP  180
FSEGSGLSKQ DCPIKDLGLQ EGDDLSKGVD FDDVTLDFNC SYEILPDSRQ TGFSDENKEL  240
DCLVMEKNSS VTGSNNVETS HEATSSVQQE YMGLQSSQIS AAASSTNLLQ TMSANANCML  300
MNSTCNGSIG ALPFLPAPIH PSMSLSLSNI TGESCAEQDC GLSPGFLNEA PWDLSLENCP  360
QKRHEAKMRY NEKKKTRTFG KQIRYASRKA RADTRRRVKG RFVKAGEAYD YDPSETRDF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g046040.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232701	0.0	Solanum lycopersicum chromosome 05 clone C05HBa0031K11, complete sequence
GenBank	AC247293	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 5 clone slm-48a1 map 5, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886990.1	0.0	zinc finger protein CONSTANS-LIKE 12-like isoform X1
Refseq	XP_025886991.1	0.0	zinc finger protein CONSTANS-LIKE 12-like isoform X1
TrEMBL	A0A3Q7GKX9	0.0	A0A3Q7GKX9_SOLLC; Uncharacterized protein
STRING	Solyc05g046040.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4231	17	26
Representative plant	OGRP1375	13	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-91	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Solyc05g046040.1.1
Entrez Gene	101255001

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]