PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g018350.2.1
Common NameLOC101267606
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 354aa    MW: 40716.5 Da    PI: 4.4406
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g018350.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.85.9e-13111196286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W+++e  +L+e+  e+  +l+r++l++ +W ev++k+ +  g+ ++ ++C++ ++ l+k+ykk+ + ++k   + +s++ +f++++
  Solyc05g018350.2.1 111 WSEEESFVLLEVWGERYLELGRRSLRAEDWGEVAEKVtEMVGVDKTEVECRNQLDVLKKKYKKEITKMEKTGGGFHSKWTFFKKMD 196
                         *************************************5567**********************99999988899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-19110198No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNDSDDETPY SSRPNAAIYN TSSLRSRRSI RNPTSYLRNT HYEYNNEFQY NHHGGAAAAH  60
DDDESDDEEA NQEFSSGEND VDNFQGKKKR KLETLVSNYN FAPRSGSKDI WSEEESFVLL  120
EVWGERYLEL GRRSLRAEDW GEVAEKVTEM VGVDKTEVEC RNQLDVLKKK YKKEITKMEK  180
TGGGFHSKWT FFKKMDMLMN LRMKGHCGLG CGLDSGEYVF MDPRMYLDRS NVLDEMRDSP  240
AGSDADNDEE EDEQGSGGWE GDDASAKLLA DSIQRFGQIY EKIENSKRKQ MMELEKMRRD  300
FQRELELQKK QIIERAQVEI AKIRGNGEND DDEDNEDEDG EETDNISGEK LRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.156960.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g018350.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239274.10.0trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A0V0I9M60.0A0A0V0I9M6_SOLCH; Putative trihelix transcription factor ASIL2-like
STRINGSolyc05g018350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-76Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]