PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g080780.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 401aa    MW: 45582.2 Da    PI: 6.513
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g080780.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093273641954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  L++++gL+++qV++WF N R +
  Solyc04g080780.2.1 327 FEHflHPYPNDSEKLMLSSQTGLSKNQVSNWFINARVR 364
                         554458******************************88 PP
2BELL97.79.6e-32189260172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         er+el  k+ kL+ lleeV++rY+qy++ ++ v s Fe++ag g+ k Yt+lAl+a+SrhF cL+d i++qi
  Solyc04g080780.2.1 189 ERHELYVKIMKLIALLEEVERRYEQYYQHMEEVTSTFEVIAGFGAGKAYTALALQAMSRHFCCLRDSIISQI 260
                         799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-27120258IPR006563POX domain
PfamPF075261.1E-37126256IPR006563POX domain
SMARTSM003893.9E-8308372IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-26313374IPR009057Homeodomain-like
CDDcd000861.07E-9314369No hitNo description
SuperFamilySSF466891.37E-16315375IPR009057Homeodomain-like
PfamPF059207.2E-17325364IPR008422Homeobox KN domain
PROSITE profilePS5007111.499327368IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTSQIGSQHF DMYQSDTTTA YQPHGGLSRS IEFVNHPDFT TDSHDVNHSR HLMDLLGASH  60
DANTNQQAQR LSLSLGSHSL VSTFTNNPSY MNQEIDQRNN EFSFSAAAMN QSFSNVCGTE  120
SFVSAIGNSK YLKPTQSLLE ELVCIGGKTI DSSNEKFIRR LSRNSKKGSL SLRAMLKGEI  180
PPNNELFNER HELYVKIMKL IALLEEVERR YEQYYQHMEE VTSTFEVIAG FGAGKAYTAL  240
ALQAMSRHFC CLRDSIISQI NFIRQKMPRD VPKISSGLSH LSLFEKETLQ NRISLQQLGI  300
IQSNRQAWQP IRGLPETSVA FLRSWLFEHF LHPYPNDSEK LMLSSQTGLS KNQVSNWFIN  360
ARVRLWKPMI EEMYKEEFAE SSVESDNLLN REAVTDSAEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15314372563Homeobox protein Meis2
3k2a_B6e-15314372563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.43100.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g080780.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759650.0Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238268.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD19e-97BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLQ7Y0Z80.0Q7Y0Z8_SOLLC; Bell-like homeodomain protein 1 (Fragment)
STRINGSolyc04g080780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.16e-92BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]