PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g080710.2.1
Common NameLOC101267521
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 406aa    MW: 44131.8 Da    PI: 8.3511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g080710.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-052963341255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Solyc04g080710.2.1 296 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 334
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-5294338No hitNo description
SuperFamilySSF474597.98E-11294346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-9298341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEPANLHQQY QYHQLQFQDQ FPLIGISPNS SSSSNNSCYG GVSTTNTWTP CTTTNTTILN  60
SHGSGLINSY SSGDIINTTK YSSSSDHPLN LVNSMSSTTH QDMGFHQWAN NNIKQENSLD  120
NSYQRFTQML KSPEGGGELS DMNAKLLLGT LSNTGLQLYH GDNNNLLYSS NSSSISTINR  180
GRFSQIYPTI NVSNLNINHQ ANSCSSLDMN LQPLDLINST RYGGSFSQTY GLTTNHFQHS  240
SSESPVNSST SISAFSNGMP EAKRTSNTLE TNKGPQNAPK KSRVDSRASC PPFKVRKEKL  300
GDRIAALQQL VAPFGKTDTA SVLMEAIGYI KFLQNQVETL SVPYMKSSRS KASRSLHGGG  360
GEMNNEEMKR DLRSRGLCLV PLTCLTYVTE GGGGVWPPPN FTGGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.104880.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43806620.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g080710.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238285.10.0transcription factor bHLH110
TrEMBLM0ZWL20.0M0ZWL2_SOLTU; Uncharacterized protein
STRINGSolyc04g080710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Representative plantOGRP1021979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-59bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]