PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g078690.2.1 | ||||||||
Common Name | LOC104647187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 34108.6 Da PI: 5.1994 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.8 | 3e-16 | 138 | 184 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Solyc04g078690.2.1 138 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.30E-18 | 128 | 188 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-19 | 131 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-20 | 131 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.841 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-14 | 138 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MADPYRTNPH ASSSLESEDM SSFFLNFLQG TPASSSATAA AGFYNRSGPA PVAESSSSLN 60 FSDPGRFYAA EFKEGVENVF ASAGLGECDG MNSANRREFL EDDKVDNFGF SSEECDGLDM 120 PSDPTHPRSS KRSRSAEVHN LSEKRRRSRI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL 180 KQLQLQVQIL TLRNGLSLYP GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP 240 QTAFEISNQN PSGKPTITSH NTENAVALET TIQNHYGLLN HLASSKDMCR DNTLSRLHLD 300 MSCSGNNSSS GVSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g078690.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886303.1 | 0.0 | probable serine/threonine-protein kinase At1g01540 | ||||
TrEMBL | A0A3Q7H210 | 0.0 | A0A3Q7H210_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g078690.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7543 | 23 | 28 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 8e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g078690.2.1 |
Entrez Gene | 104647187 |
Publications ? help Back to Top | |||
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