PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g114260.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 31137.2 Da PI: 5.2873 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.1 | 2e-20 | 1 | 126 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhPtd el+ +yLk+ +g+ +++ i+ +diy Pw++ ++ eek yf ++ +k+ ++ r +r+ ++g+Wk + ++ Solyc03g114260.1.1 1 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANFEEKFRYFITPLKKRRIKDARFSRTCAKGTWKGQTGEEL 89 59***********.9*******9985444556*******87368***6.556677888**************************7777777 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g +vg k+ + f +++ g++ +W+m ey++ Solyc03g114260.1.1 90 IRRNgMGPVVGFKRKFRFE-TSDQCGHNKTWLMIEYQV 126 877656778*********7.7889999*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.32 | 1 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-14 | 2 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-23 | 2 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGIRFHPTDT ELINYLKRFF KGELSLNQQC PIQFADIYGD QPPWEIFGAN FEEKFRYFIT 60 PLKKRRIKDA RFSRTCAKGT WKGQTGEELI RRNGMGPVVG FKRKFRFETS DQCGHNKTWL 120 MIEYQVADSF FKENNHILKE DFVVCRIKKK KIMDKEKNVD HVIEAQDGDV AGIIDPMLLD 180 PNHNNVYSTR EDQVRVCDEV EATTTEFDVR NTMEKRETAL EVQEGNGVDD IRSNEFQEGM 240 YKVLQDFSFD IPDEWLQNSH ILQDI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 67 | KKRRIK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g114260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246931 | 1e-177 | Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence | |||
GenBank | AC246997 | 1e-177 | Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236507.2 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A3Q7GFY9 | 0.0 | A0A3Q7GFY9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 5e-15 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g114260.1.1 |
Publications ? help Back to Top | |||
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