PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g104810.2.1 | ||||||||
Common Name | LOC101246903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 487aa MW: 53900.3 Da PI: 7.2849 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 214 | 270 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk se+prsYY+Ct+ +C vkkkvers d++++eitY+g+Hnhe Solyc03g104810.2.1 214 SDGYNWRKYGQKMVKASECPRSYYKCTHLKCLVKKKVERSI-DGHITEITYKGHHNHE 270 7****************************************.***************7 PP | |||||||
2 | WRKY | 105.5 | 2.8e-33 | 384 | 442 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk+v++tYeg+Hnh+ Solyc03g104810.2.1 384 LDDGFKWRKYGQKMVKGNHHPRSYYRCTYPGCNVRKHVERASADPKAVITTYEGKHNHD 442 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.825 | 208 | 272 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-27 | 208 | 272 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-25 | 212 | 272 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-34 | 213 | 271 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-23 | 215 | 270 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-36 | 370 | 444 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-29 | 376 | 444 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.668 | 379 | 444 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-40 | 384 | 443 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-26 | 385 | 442 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MGENFKAPSV SVSSLSTLTI PPKDSFFGGG NMPYFSPGPM TLVSTFFSES EYPSFSQLLA 60 GAMASPLAKP PTLFPGEEEN CKQGYKQNRP MNLMVAQSPF FTIPTAFTPS GLLNSPGFLS 120 AVQSPFGMSH QQALAHVTAQ AALSQSYLQT QAECHFPSQS KSVQVLGASD PEESSLQPQL 180 DTMSSDQKSK KFELPQLSQS EDKPSFNSVD RPASDGYNWR KYGQKMVKAS ECPRSYYKCT 240 HLKCLVKKKV ERSIDGHITE ITYKGHHNHE LPQPNKRRRD SCAQDGSDCS NINPETGTHT 300 ELEINGLNGA LVAHSEQVST EMACERSVSN ECEDAETAAS KEHDDEPNVK RMKTTVETPI 360 LSSSHKAEPE SKIVVQTRSE VDILDDGFKW RKYGQKMVKG NHHPRSYYRC TYPGCNVRKH 420 VERASADPKA VITTYEGKHN HDIPIARNRS HSTAQNSSRQ LNEQEIATWR PAILEKVALH 480 TSEIQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-37 | 215 | 444 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-37 | 215 | 444 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8608 | 0.0 | flower| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g104810.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215477 | 7e-44 | Solanum lycopersicum chromosome 2 clone C02SLm0042B19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235494.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-124 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A3Q7FR36 | 0.0 | A0A3Q7FR36_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g104810.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4314 | 23 | 44 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-123 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g104810.2.1 |
Entrez Gene | 101246903 |
Publications ? help Back to Top | |||
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