PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g062750.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 123aa MW: 14427.8 Da PI: 10.5147 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58 | 3.2e-18 | 5 | 113 | 3 | 109 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhPtd el+ +yLk+ +g+ l+ ++ i+ +diy Pw++ ++ + +ek yf ++ +k++ ++kr r+ ++g+Wk + + Solyc03g062750.1.1 5 MGIRFHPTDTELI-NYLKRFFKGELcLNKQSPIQFADIYGDqPPWEIFEANSCKEKFRYFITPLRKRKMKDKRFCRTCAKGTWKGQTAEDL 94 7************.9********995444455*******87368***64444466677**************************9999999 PP NAM 92 vlsk.kgelvglkktLvfy 109 + ++ g +vg k+ + f Solyc03g062750.1.1 95 IRRNgMGPVVGFKRNFRFE 113 9887566779*****9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.228 | 3 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-16 | 5 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-11 | 5 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MSKQMGIRFH PTDTELINYL KRFFKGELCL NKQSPIQFAD IYGDQPPWEI FEANSCKEKF 60 RYFITPLRKR KMKDKRFCRT CAKGTWKGQT AEDLIRRNGM GPVVGFKRNF RFETSVCGQN 120 KT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g062750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246931 | 1e-136 | Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence | |||
GenBank | AC246997 | 1e-136 | Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015067530.1 | 3e-83 | NAC domain containing protein 52-like | ||||
TrEMBL | A0A3Q7FKZ9 | 3e-86 | A0A3Q7FKZ9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g062750.1.1 | 4e-87 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 7e-11 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g062750.1.1 |
Publications ? help Back to Top | |||
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