PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g062670.1.1 | ||||||||
Common Name | LOC101267494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 283aa MW: 33025.3 Da PI: 4.5649 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.9 | 2.7e-21 | 5 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhPtd el+ +yLk+ +g+ +++ i+ +diy Pw++ ++++ek yf ++ +k++ ++kr r+ +g+Wk + + Solyc03g062670.1.1 5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANSKEKFHYFITPLKKRKIKDKRFCRTCVKGTWKGQTAEDL 93 7************.9*******9985444556*******87368***6.56666677789999999999***************9999888 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g +vg k+ + f +++ g++ +W+m eyr+ Solyc03g062670.1.1 94 IRRNnMGPVVGFKRNFRFE--TSECGQNKTWLMIEYRV 129 888656677*********8..788999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.474 | 3 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.15E-22 | 5 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-15 | 5 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANSKEKFH 60 YFITPLKKRK IKDKRFCRTC VKGTWKGQTA EDLIRRNNMG PVVGFKRNFR FETSECGQNK 120 TWLMIEYRVA DSFFKENNHI VKEDFVVCRI KKKKDVDHHV MDAEDEGVAG VIDPMLLLEP 180 NHNNDYSTTE LDQVRVCEAI TLNDDVQNSN TMENRETSLE VEESDRVDGI RGDEDMCRIF 240 EDILDVDIPN VIDDIKSDED MYRMFEDIVI GIPDEWLEDS LV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RIKKKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g062670.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246931 | 0.0 | Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence | |||
GenBank | AC246997 | 0.0 | Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234876.2 | 0.0 | NAC domain containing protein 52-like | ||||
TrEMBL | A0A3Q7FKY8 | 0.0 | A0A3Q7FKY8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g062670.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 4e-16 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g062670.1.1 |
Entrez Gene | 101267494 |
Publications ? help Back to Top | |||
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