PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g031450.2.1
Common NameLOC101263190
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 339aa    MW: 38826 Da    PI: 4.8806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g031450.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.1e-062322691254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L++A+eYI+ L
  Solyc03g031450.2.1 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYINFL 269
                         677888999*******998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-11230284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-6230273No hitNo description
SMARTSM003530.0076231275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADEYFQDGV YGESLWINST KNIFSLSSST NSILDPIIGR YNFAWPNDDQ FLDMKNMSNN  60
NDDYYSSSDD SIVFQEFPKN HNLGINENSS SPDWNHSIND SMLQEKLNSR ENYPNHNELK  120
RNFSSIISED NSLIKPIMNQ DFTNYYSDLL QTLFANTDLH EEQPQQQSFN YPSSSINHRQ  180
KLKDFVPSLP KFDIEEIGES KLSSITKNNT NEQTNKRQRI ETPSSLPTFK VRKEKLGDRI  240
TALQQLVSPF GKTDTASVLQ EAIEYINFLH DQVNVFSNRY MKNGPPTQHQ QVKELQEGLK  300
QGLRSKGLCL VPISSTFPLA AETTMEFWTP TLMGTTVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g031450.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469561e-164Solanum lycopersicum chromosome 3 clone MboI0020O17, complete sequence
GenBankAC2470191e-164Solanum lycopersicum chromosome 3 clone MboI0020O17, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234582.10.0transcription factor bHLH112-like
TrEMBLA0A3Q7FHS10.0A0A3Q7FHS1_SOLLC; Uncharacterized protein
STRINGSolyc03g031450.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-47bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]