PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g006900.1.1

Common Name

LOC101253357

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 978aa MW: 109937 Da PI: 7.4864

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g006900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28	5.7e-09	203	260	18	75
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 + ++rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ Solyc03g006900.1.1 203 GAGSGRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ 260 55667899999999**************************************975444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	5.6E-6	803	924	No hit	No description
SuperFamily	SSF56112	2.82E-16	824	961	IPR011009	Protein kinase-like domain
CDD	cd00180	3.85E-18	824	962	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence Send to blast
MDENKGDTTK KQHLSNSPVD PHEQDSPDNT IPLQHPVVSA APYISSSALY NIPTAAAATS 60 FEQQHQFDAV NTKRPRYTSS QWKFISSHHQ QQQQQKAGTI LSAESSPISP TAHATTATNI 120 PQTQVPTASS SDTASSPSHS PRPCSEPSKS EGGEQVHQQF RKGKYVSPVW KPNEMLWLAR 180 AWKIQYQGSG SSSELVHLEG SPGAGSGRGK TRADKDREVA EFLNRHGVNR DAKTAGTKWD 240 NMLGEFRKVY EWERGAEREQ IGKSYFRLSP YERKIHRLPA SFDEQVFEEL SQFMGSRMRT 300 PQTRIGTQSN SIADDIPTPL IVTKSLPPPP PPFREDELPH SARAKQLVMS RGTETLIHGT 360 RGGFLGFETV QPSSSLDIMG GGPSSSGSKE LRRIGKIRMI WEESVSLWAE EGEHHRGRVK 420 LQGCSFLNAD EIAFLDDSMV ASTMEAFEDG PMKGFSVDRF QSGIQLKVFG RRKSSSPIAP 480 CGPSERLQLP SSEFPIRSTT PWEFQDPTEY YVGCLRSPPP TLPTLFELSW HLQQPPPEEL 540 RFPLRRDVFK DLPQGRELFF TTSSTELLDC RGITYDVLTC IMRSNPSLNA ATATDRDSYI 600 GLWDDCINRM ISKFCSIEMV FVRKSSSSLA ETVQDQWPNV TAFLRNFCLW RGEETDQLRE 660 GQLDPSSSIV EKFLWSYMDL PYVLGYYAVG FIVTFCALSR SQERIIRTDL YTVDLSTPVE 720 RLKALVPCWR IAGLLPLLAD KCFHYMSSNF KHLLYTDFER TDFGNGNFME MTPNTVVRYF 780 SSKRKWLGMK EIYDFLDHRI PHAEFVVRAS EKDLALVFKP RGCKFKPVNC DQLIEALKQV 840 TKALVALHDL SFMHRDLGWD KVMRRIDREN EWFITGFDEA VTAPQLYPHG GAAAAGTTGI 900 GRHPPEMGRN YHGVKVDVWG IGQLVKSCGL VGVPKLLREL QNRCLDHNPE QRPTAADCYR 960 HLLQLQSSIS AAAAGGY*

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence Send to blast

MDENKGDTTK KQHLSNSPVD PHEQDSPDNT IPLQHPVVSA APYISSSALY NIPTAAAATS  60
FEQQHQFDAV NTKRPRYTSS QWKFISSHHQ QQQQQKAGTI LSAESSPISP TAHATTATNI  120
PQTQVPTASS SDTASSPSHS PRPCSEPSKS EGGEQVHQQF RKGKYVSPVW KPNEMLWLAR  180
AWKIQYQGSG SSSELVHLEG SPGAGSGRGK TRADKDREVA EFLNRHGVNR DAKTAGTKWD  240
NMLGEFRKVY EWERGAEREQ IGKSYFRLSP YERKIHRLPA SFDEQVFEEL SQFMGSRMRT  300
PQTRIGTQSN SIADDIPTPL IVTKSLPPPP PPFREDELPH SARAKQLVMS RGTETLIHGT  360
RGGFLGFETV QPSSSLDIMG GGPSSSGSKE LRRIGKIRMI WEESVSLWAE EGEHHRGRVK  420
LQGCSFLNAD EIAFLDDSMV ASTMEAFEDG PMKGFSVDRF QSGIQLKVFG RRKSSSPIAP  480
CGPSERLQLP SSEFPIRSTT PWEFQDPTEY YVGCLRSPPP TLPTLFELSW HLQQPPPEEL  540
RFPLRRDVFK DLPQGRELFF TTSSTELLDC RGITYDVLTC IMRSNPSLNA ATATDRDSYI  600
GLWDDCINRM ISKFCSIEMV FVRKSSSSLA ETVQDQWPNV TAFLRNFCLW RGEETDQLRE  660
GQLDPSSSIV EKFLWSYMDL PYVLGYYAVG FIVTFCALSR SQERIIRTDL YTVDLSTPVE  720
RLKALVPCWR IAGLLPLLAD KCFHYMSSNF KHLLYTDFER TDFGNGNFME MTPNTVVRYF  780
SSKRKWLGMK EIYDFLDHRI PHAEFVVRAS EKDLALVFKP RGCKFKPVNC DQLIEALKQV  840
TKALVALHDL SFMHRDLGWD KVMRRIDREN EWFITGFDEA VTAPQLYPHG GAAAAGTTGI  900
GRHPPEMGRN YHGVKVDVWG IGQLVKSCGL VGVPKLLREL QNRCLDHNPE QRPTAADCYR  960
HLLQLQSSIS AAAAGGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g006900.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234266.1	0.0	uncharacterized protein LOC101253357
TrEMBL	A0A3Q7FFT2	0.0	A0A3Q7FFT2_SOLLC; Uncharacterized protein
STRING	Solyc03g006900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16
Representative plant	OGRP9479	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-09	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc03g006900.1.1
Entrez Gene	101253357

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]