PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g090950.1.1
Common NameLOC101250861
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 223aa    MW: 24768.4 Da    PI: 9.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g090950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08126166954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Solyc02g090950.1.1 126 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 166
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14118177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14121179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6127166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-6140171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDLQNIAHSL ELGFSNSNIE MIPLQSPLHN SNYLMNSPPS NFSFMGNPIE EPAAMPILSS  60
IDEIIASTHG NGNDYSCLQR RNSMEAMREM IFRIAMMQPI HIDPESVKPP KRKNVKISKD  120
PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAV HYVKFLKKQL QSLEQAAVNN  180
RPMISGFSTA MSSPGGPMNY NSSSIRACQP HQSMNSGAQM LS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.124260.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g090950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153830.0Solanum lycopersicum chromosome 2 clone C02HBa0104A12, complete sequence
GenBankAC2154490.0Solanum lycopersicum chromosome 2 clone C02SLe0022J22, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233628.11e-163transcription factor HEC1
TrEMBLA0A3Q7FC241e-161A0A3Q7FC24_SOLLC; Uncharacterized protein
STRINGSolyc02g090950.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-44bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]