PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g089830.1.1 | ||||||||
Common Name | TCP7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 242aa MW: 27338.7 Da PI: 10.22 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.8 | 3.9e-38 | 63 | 183 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +kkdrh ki T++g RdRRvRls+ +a++fFdLqd+LG+dk+skt++WL++++k ai +l ++ s++++ s +++ n+++++++ Solyc02g089830.1.1 63 QVKKDRHTKILTSQGHRDRRVRLSIGVARKFFDLQDMLGYDKPSKTLDWLFTKSKLAIEDLINDVSKKSTPL---SIHNN--NNNNNSECD 148 589*************************************************************66666333...22222..223334555 PP TCP 93 saakskksqksaasalnlakesrakarararertrekmri 132 +++ ++k ++ ++srakarararert +k + Solyc02g089830.1.1 149 EDMIVPLAKKAKQ-----ERDSRAKARARARERTIKKIWT 183 5554444333333.....679*************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.2E-35 | 64 | 148 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.327 | 65 | 123 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.497 | 163 | 180 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MFPFGNSSNG GNPILHSSFL NNQILLHQHD LPTHHHYLAA ANGHSIDSYA TNNVAINNKS 60 KKQVKKDRHT KILTSQGHRD RRVRLSIGVA RKFFDLQDML GYDKPSKTLD WLFTKSKLAI 120 EDLINDVSKK STPLSIHNNN NNNNSECDED MIVPLAKKAK QERDSRAKAR ARARERTIKK 180 IWTQIAPNRE ATASHYNNST RNWNHDDVNP TIMSSMDAST ICCTSLPIVQ KAWDSYHGSQ 240 I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g089830.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | Solyc02g089830.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496325 | 0.0 | Solanum lycopersicum TCP transcription factor 7 (TCP7) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233797.1 | 0.0 | transcription factor TCP7 | ||||
TrEMBL | G3BGU7 | 1e-180 | G3BGU7_SOLLC; TCP transcription factor 7 | ||||
STRING | Solyc02g089830.1.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 7e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g089830.1.1 |
Entrez Gene | 100736517 |
Publications ? help Back to Top | |||
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