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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g082670.2.1 |
| Common Name | LOC101258516 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
WOX |
| Protein Properties |
Length: 275aa MW: 30745.4 Da PI: 5.6102 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g082670.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 68.3 | 9.5e-22 | 94 | 154 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+t+ ql++Le+ Fe+ n +p++++++e++++l +++e++V++WFqNrRa+ k+
Solyc02g082670.2.1 94 RQRWTPTPMQLQILERIFEQgNGTPTKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 154
89*****************99**************************************97 PP
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| 2 | Wus_type_Homeobox | 101.7 | 5.2e-33 | 94 | 156 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
Solyc02g082670.2.1 94 RQRWTPTPMQLQILERIFEQGNGTPTKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 156
89***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MDWEKQQQQP PVSAPQQTAE ELNGTVSGGM FVKVMTDEQM EVLRKQIAVY ATICEQLVDL 60
HKSMASQHDL AGARLGNLYC DPLVTSAGHK ITGRQRWTPT PMQLQILERI FEQGNGTPTK 120
QKIKEITSEL SQHGQISETN VYNWFQNRRA RSKRKQQVAA TNNTESEVET EVESPNEKKT 180
KPEDLQSSHM PTSMAEDLGY ENPDVSSGMH SLDPRTSKPE PMFPSDGSSK PAASYGQMSF 240
YGMSNPRMDQ LMGKMEVPGS YHPYIHADDY NMTG*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 147 | 155 | RRARSKRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215450 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0026H18, complete sequence |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505]
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