PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g076920.2.1 | ||||||||
Common Name | LOC101252043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26638.4 Da PI: 8.8885 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.6e-13 | 53 | 99 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ K++Ka+ L ++v+ +k+L Solyc02g076920.2.1 53 KSHSEAERRRRQRINAHLSTLRNLVPSS-----DKMDKAALLAEVVRQVKQL 99 58*************************8.....7*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.87E-11 | 53 | 101 | No hit | No description |
Pfam | PF00010 | 1.7E-10 | 53 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-13 | 53 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.6E-4 | 138 | 181 | No hit | No description |
CDD | cd04873 | 4.48E-6 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MNCRNLGEFC ENEAKGVVQS LVLDSEKGEL VKASGRVEKK IGKSEGKTIA ALKSHSEAER 60 RRRQRINAHL STLRNLVPSS DKMDKAALLA EVVRQVKQLK ETATHDSERF FIPLDSDEIK 120 VEIIAENAID GTCLFRASVC CEYRTHLLSD LKQTINSLHV NLVKSEISTL GSRVKNVFLF 180 TNSIHGGGGC ATIQARDIFL SSVRQAFSSV LDKVSAFPEY SAYPNKRQRV SCFDSSSLLF 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g076920.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215388 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0122E16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232970.1 | 1e-176 | transcription factor bHLH30-like | ||||
TrEMBL | A0A3Q7FPX7 | 1e-175 | A0A3Q7FPX7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g076920.2.1 | 1e-176 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6730 | 22 | 30 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g076920.2.1 |
Entrez Gene | 101252043 |
Publications ? help Back to Top | |||
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