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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc02g069720.2.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
LSD |
| Protein Properties |
Length: 163aa MW: 16795.4 Da PI: 8.3793 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g069720.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 26.1 | 1.4e-08 | 1 | 18 | 7 | 24 |
zf-LSD1 7 lLsYPrGApsVRCalCdt 24
+L YPrGA++V+Ca+C++
Solyc02g069720.2.1 1 MLLYPRGASNVCCAVCNA 18
699*************97 PP
|
| 2 | zf-LSD1 | 45.4 | 1.3e-14 | 34 | 58 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+ PrGA sVRC++C+tV
Solyc02g069720.2.1 34 CGGCRTLLMHPRGANSVRCSCCHTV 58
************************9 PP
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| 3 | zf-LSD1 | 39.3 | 1.1e-12 | 72 | 95 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Cr +L+YP GApsV+Ca+C+
Solyc02g069720.2.1 72 CGNCRMMLMYPCGAPSVKCAVCHY 95
**********************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MLLYPRGASN VCCAVCNALT PVPPPGMEMA QLICGGCRTL LMHPRGANSV RCSCCHTVNL 60
VPGPNQFAHV YCGNCRMMLM YPCGAPSVKC AVCHYITNVN AGDGRAHAPL NPPNGTATTA 120
SGSSSTAKAR SQNQTVVVQN PMSVDESGKL VSNVVVGVTT TS*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Les.2556 | 0.0 | cell culture| fruit| leaf| root| trichome |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505]
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