PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 441aa MW: 48396.9 Da PI: 7.3354

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g067430.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.4	7.2e-29	205	263	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK +g+++prsYYrC+ a Cpv+k+v+r+ ed +++++tYeg+Hnh+ Solyc02g067430.2.1 205 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCLEDMSILITTYEGTHNHS 263 8*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-30	189	265	IPR003657	WRKY domain
SuperFamily	SSF118290	1.07E-25	196	265	IPR003657	WRKY domain
PROSITE profile	PS50811	27.267	199	265	IPR003657	WRKY domain
SMART	SM00774	3.1E-34	204	264	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	205	262	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEKKRDNSIS SANNHEEEDV KKISKDDEFK SAIAEVNKIK LENARLKLLL QQIEKDYTSL 60 QTRFFNICQP DFKKSSGSPT CTHENIADEE ESELVSLRLG RSPSPSEYKK VDKKRSYDKT 120 IEDSPSCNDQ SNNGLKLGLD YSTGVCESEF IKPSNDPSPG PTSEVVKTVK KCDDESIKKD 180 DEVSQPNVKR ARVSVRTKCD YPTINDGCQW RKYGQKISRG NPCPRSYYRC SVAPLCPVRK 240 QVQRCLEDMS ILITTYEGTH NHSLPIEATA MASTTSAAAS MLLSGSSTSF QTSKNLPNIS 300 KTTPLYLSNS SSNPFPTITL DFTTFPTTSS FTSFNFPSNF QSGLGFLSNS LSFSSTESTT 360 MPILGSGGLN YDSTSTLPYH NNLINIGSSH KQFDTSSNKL KEDSSQQALT ETLTKAITSD 420 PSFQSVLAAA ISSMVGATKT *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEKKRDNSIS SANNHEEEDV KKISKDDEFK SAIAEVNKIK LENARLKLLL QQIEKDYTSL  60
QTRFFNICQP DFKKSSGSPT CTHENIADEE ESELVSLRLG RSPSPSEYKK VDKKRSYDKT  120
IEDSPSCNDQ SNNGLKLGLD YSTGVCESEF IKPSNDPSPG PTSEVVKTVK KCDDESIKKD  180
DEVSQPNVKR ARVSVRTKCD YPTINDGCQW RKYGQKISRG NPCPRSYYRC SVAPLCPVRK  240
QVQRCLEDMS ILITTYEGTH NHSLPIEATA MASTTSAAAS MLLSGSSTSF QTSKNLPNIS  300
KTTPLYLSNS SSNPFPTITL DFTTFPTTSS FTSFNFPSNF QSGLGFLSNS LSFSSTESTT  360
MPILGSGGLN YDSTSTLPYH NNLINIGSSH KQFDTSSNKL KEDSSQQALT ETLTKAITSD  420
PSFQSVLAAA ISSMVGATKT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	191	265	1	74	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g067430.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238478	3e-15	Solanum lycopersicum chromosome 3 clone C03SLm0111H07, complete sequence
GenBank	GU017421	3e-15	Solanum lycopersicum WRKY72 mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233924.1	0.0	probable WRKY transcription factor 72
TrEMBL	A0A3Q7F087	0.0	A0A3Q7F087_SOLLC; Uncharacterized protein
STRING	Solyc02g067430.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12805	19	21
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-58	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Solyc02g067430.2.1
Entrez Gene	101253158

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]