PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g062070.1.1

Common Name

LOC104646073

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 306aa MW: 34519.9 Da PI: 4.8295

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g062070.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.2	2.6e-09	16	80	60	128
NAM 60 fFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 F++ ++k+++gk+ nr + g Wk ++++v++kkg +g kkt+ f ++ + W+m+eyrl Solyc02g062070.1.1 16 NFVTVKEKKRNGKNFNRgiVGGGGSWKGVNNSRPVYNKKGLMIGFKKTFRFD--EN----NHVWFMKEYRL 80 5888889999*****74445899**********************7..22....458****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	13.349	1	107	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-12	17	107	IPR003441	NAC domain
Pfam	PF02365	8.7E-5	29	80	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGMNFDDEGL LNYLINFVTV KEKKRNGKNF NRGIVGGGGS WKGVNNSRPV YNKKGLMIGF 60 KKTFRFDENN HVWFMKEYRL CDKLLEDLRL HGKIRYEDYV LCSIRMKVNW GHFRQNLLAS 120 SSSQCQETVK SSAANVIPSD QLNSTLNGNI RPVTLVFKES NVTQWPATIQ EECFVPVIHQ 180 EIPSVSFGAI EEDCSVPVVH PETHSVSFAA TEEECSVPVV HQEIPSVSFV AKESNVSASK 240 EVEECSVPVE TRPDNDIATY HKELDAYAAS ILETMVPYIP EVQEDEDDIP LFSEDFYIGH 300 TNLWS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g062070.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010317372.1	0.0	uncharacterized protein LOC104646073
TrEMBL	K4B697	0.0	K4B697_SOLLC; Uncharacterized protein
STRING	Solyc02g062070.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3381	10	41

Link Out ? help Back to Top
Phytozome	Solyc02g062070.1.1
Entrez Gene	104646073

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]