PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g005290.2.1

Common Name

LOC101248824

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 519aa MW: 57645.4 Da PI: 10.0051

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g005290.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	55.7	1.4e-17	51	139	6	98
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 ws+eDei++L+Gli+ k+++g + d ++y+ +k+s+ k ++ l +Ki+ L++K+k++ +k + + s +h+++ f ls ki Solyc02g005290.2.1 51 AWSKEDEITILKGLIKLKTEKG-KIRFDYVQLYDSIKQSLAHKsATPLHLQKKIKCLREKYKNNFNK----STRTWSIPHEEELFYLSDKI 136 4*******************.5577999******8872556799*************....7788999*********** PP DUF573 96 Wgs 98 Wg+ Solyc02g005290.2.1 137 WGK 139 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.6E-16	51	138	IPR007592	Protein of unknown function DUF573
SuperFamily	SSF54534	5.3E-25	369	516	No hit	No description
Gene3D	G3DSA:3.10.50.40	7.2E-24	393	516	No hit	No description
Pfam	PF00254	1.6E-16	426	514	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain
PROSITE profile	PS50059	18.607	430	517	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization
GO:0006457	Biological Process	protein folding
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MENGVLQQGS IILTNSIVDS EIMQRRGKLM PRGGGGGSEK MIKKKSEKVG AWSKEDEITI 60 LKGLIKLKTE KGKIRFDYVQ LYDSIKQSLA HKSATPLHLQ KKIKCLREKY KNNFNKSTRT 120 WSIPHEEELF YLSDKIWGKD DHQQLKIPSS SLMNQQQLTI PSSSLMNQQH LTLPSSSLMN 180 QQQLTLPSSS LMNQQQLTLP SSSLMNQQFT ISDTTFVGDL GLALTTMSRN QSNQMQVALQ 240 QFKLVSQSLS IRKSYANQIL HAHITLKEEG LSEQKIARSY FDTKIQHAQL VSDAYNASHG 300 FGGSLVNIVS DCVLKEDATK VMNEGSCPPA TIGCRKPING KPSGTSLKSV REMCHSQERK 360 KKKKRKIENP EKHRDSSIQS QLEMENQSAV AYAKINYESA KSSDIHTLSD GLTVEVMVKG 420 KADGKVASLG KQIKIHFIAK LRDTGCIVGS TIGAAPHQFC LGYEKVLKGL NIGIEGMHVG 480 EKRRLTIPPS LGPGRKAKPP IMPDSWLLYE VELVDICE*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MENGVLQQGS IILTNSIVDS EIMQRRGKLM PRGGGGGSEK MIKKKSEKVG AWSKEDEITI  60
LKGLIKLKTE KGKIRFDYVQ LYDSIKQSLA HKSATPLHLQ KKIKCLREKY KNNFNKSTRT  120
WSIPHEEELF YLSDKIWGKD DHQQLKIPSS SLMNQQQLTI PSSSLMNQQH LTLPSSSLMN  180
QQQLTLPSSS LMNQQQLTLP SSSLMNQQFT ISDTTFVGDL GLALTTMSRN QSNQMQVALQ  240
QFKLVSQSLS IRKSYANQIL HAHITLKEEG LSEQKIARSY FDTKIQHAQL VSDAYNASHG  300
FGGSLVNIVS DCVLKEDATK VMNEGSCPPA TIGCRKPING KPSGTSLKSV REMCHSQERK  360
KKKKRKIENP EKHRDSSIQS QLEMENQSAV AYAKINYESA KSSDIHTLSD GLTVEVMVKG  420
KADGKVASLG KQIKIHFIAK LRDTGCIVGS TIGAAPHQFC LGYEKVLKGL NIGIEGMHVG  480
EKRRLTIPPS LGPGRKAKPP IMPDSWLLYE VELVDICE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3uqa_A	2e-14	382	516	79	209	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	363	ERKKKKK
2	359	365	KKKKKRK
3	360	365	KKKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23012	0.0	floral bud\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g005290.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231466.1	0.0	uncharacterized protein LOC101248824 isoform X2
TrEMBL	A0A3Q7FFG3	0.0	A0A3Q7FFG3_SOLLC; Peptidylprolyl isomerase
STRING	Solyc02g005290.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13760	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-09	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc02g005290.2.1
Entrez Gene	101248824

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]