PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g107950.1.1
Common NameLOC101258503
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 306aa    MW: 33951.5 Da    PI: 6.9902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g107950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10103146855
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          Er RR+++++ fe+L  l+P++      K +K++i+ +Av++I +Lq
  Solyc01g107950.1.1 103 TERERRKKMRTLFETLHALVPNL----PAKADKSTIVYEAVNHIVKLQ 146
                         6*********************6....39***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1492157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1093147No hitNo description
PROSITE profilePS5088813.02795145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1299158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-4103151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-8103146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.3E-5224286No hitNo description
PROSITE profilePS516718.543226305IPR002912ACT domain
CDDcd048735.91E-4227258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNIDGENNHG LPWETNDFWS YLNDNQVGSE ETFDGDKVPG PTKSDICQQL TIVNEVVEVT  60
PAVGKKRSPP NRKSNGKGIA EPNLDVGGAE GKRESEHEIH IWTERERRKK MRTLFETLHA  120
LVPNLPAKAD KSTIVYEAVN HIVKLQNTFK KLKSQKLEKL EEYNIGLAGS QKVYNSWEKY  180
VVDQGSTCNS TAITPTNHGA SPLIPTGFMT WSSPNVILNV CGEDAHISVC CPKKSGLFTI  240
ICYVLEKHKI DIVSAQISCD QFRSMFMIQA HAKSGRDVAQ FSEAFTVEER LKQAATEIMA  300
LATSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g107950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231394.20.0transcription factor bHLH95-like
TrEMBLA0A3Q7ESB30.0A0A3Q7ESB3_SOLLC; Uncharacterized protein
STRINGSolyc01g107950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-19bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]