PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g100990.2.1 | ||||||||
Common Name | LOC101259582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 151aa MW: 16845.7 Da PI: 8.2041 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.2 | 1.8e-10 | 58 | 80 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtG+C+yGd+Ck+ H++ Solyc01g100990.2.1 58 VCNHFVRTGYCQYGDSCKYYHPK 80 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 3.0E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.23E-15 | 4 | 53 | No hit | No description |
Pfam | PF06220 | 1.4E-9 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
SMART | SM00356 | 4.1E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.206 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-7 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-8 | 58 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-7 | 58 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MPLGKYYCDY CDKEFQDTAA ARRRHLQGVQ HQRAKALWYD SLRNPQLFND PDSFGKGVCN 60 HFVRTGYCQY GDSCKYYHPK QNPQTVNQTG LPPGENSREG FHSSSQPFGS ASFPGDVFRE 120 KAGASLSNLP PSLRPPPEGG YPPLPFVEWG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.12470 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g100990.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238910 | 4e-67 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131o24 map 1, complete sequence | |||
GenBank | AC238948 | 4e-67 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-1h15 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888736.1 | 1e-109 | zinc finger CCCH domain-containing protein 3 isoform X2 | ||||
Swissprot | Q0JP11 | 5e-47 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A3Q7ENY2 | 1e-108 | A0A3Q7ENY2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g100990.2.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12008 | 18 | 21 | Representative plant | OGRP8539 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-31 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g100990.2.1 |
Entrez Gene | 101259582 |
Publications ? help Back to Top | |||
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