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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g096070.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 690aa MW: 76964 Da PI: 6.5109 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g096070.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.2 | 1.6e-23 | 115 | 215 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF
Solyc01g096070.2.1 115 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL- 202
99**************************999543..445568************************************************. PP
-SSSEE..EEEEE- CS
B3 85 dgrsefelvvkvfr 98
+++++el+v+v+r
Solyc01g096070.2.1 203 -RDDSGELRVGVRR 215
.568999*****98 PP
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2 | Auxin_resp | 101.8 | 8.8e-34 | 241 | 320 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t++ F v+Y+Pr+ s+F+v ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vg+ d+++ +W++SkWrsLk
Solyc01g096070.2.1 241 ASHAITTQTRFVVYYKPRT--SQFIVGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGTGDISS-QWSESKWRSLK 320
789***************6..9**********************************************777.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 690 aa
Download sequence Send
to blast |
MNLGMGTEDL YRDLWKACAG PLVDVPREGE RVYYFPQGHI EQLEASTNQA VNQQIPQFNL 60 ASKILCHVFH VQLLAETETD EVYAQITLHP EAEQEEPSKP DPCPPDLPKR TVHSFCKILT 120 ASDTSTHGGF SVLRKHANEC LPQLDMTQAT PTQDLVAKDL HGYEWRFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDAFV FLRDDSGELR VGVRRLARQQ SPIPQSVISS QSMHLGVLAT 240 ASHAITTQTR FVVYYKPRTS QFIVGLNKYL EAVSHGFSVG MRFRMRFEGE DSPERRFTGT 300 IVGTGDISSQ WSESKWRSLK IQWDEPASMV RPDRVSPWEI EPFVASTCVD VAQPGIKSKR 360 PRPLDLPRSE IAVASAASPF WCPGSGLTLE VSHLGGITEV QSRDNQLFWS SKQSSSLSNG 420 MSNTSCRTHL SGAWQHNMLA NGSLNLLRDS IEDNKQLITR SALLDYGSPM SSRVSSGLLH 480 DQVNRGSKHV ISSACRLFGI DLRNNSNNTP SKAKEMLGPN ITSNCADEAP VVHDESEVDK 540 DQNVGHLNPS EEKKQFQLEA LPKDTQKQGP TSSRTRTKVQ MEGVCVGRAV DLTALSGYDD 600 LISELEKIFD IKGELCPRNK WEVVYTDDEG DMMLVGDDPW LEFCKMVRRI FIYSSEEVKK 660 MTPRCKLPIL SLEGEGTMPS VDSELKAEG*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC233120 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence |