PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g091630.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 822aa MW: 89849.9 Da PI: 6.2812 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.8e-21 | 126 | 181 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k Solyc01g091630.2.1 126 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 181 688999***********************************************999 PP | |||||||
2 | START | 198.5 | 3e-62 | 333 | 557 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +ep+W++s e++n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + Solyc01g091630.2.1 333 ELALAAMEELVKMAQTDEPLWFRSIeggrEILNHEEYIRTFTPCIGmrpnsFISEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaR 422 5899**************************************9999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg+++++++ng+s Solyc01g091630.2.1 423 TSTTDVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFPNSRRLPSGCVVQDMPNGYS 513 ****************************************************************999************************ PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwveh+++++ h l+r+l++ g+ +ga++wvatlqrqce+ Solyc01g091630.2.1 514 KVTWVEHAEYEEGANHHLYRQLISAGMGFGAQRWVATLQRQCEC 557 ******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 112 | 177 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-20 | 113 | 183 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 123 | 183 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-19 | 124 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.34E-19 | 125 | 183 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 126 | 181 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 158 | 181 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.74 | 324 | 560 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-31 | 326 | 557 | No hit | No description |
CDD | cd08875 | 1.78E-122 | 328 | 556 | No hit | No description |
SMART | SM00234 | 5.5E-48 | 333 | 557 | IPR002913 | START domain |
Pfam | PF01852 | 6.9E-54 | 333 | 557 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.19E-23 | 576 | 807 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000022 | anatomy | plant cuticle | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0001002 | developmental stage | fruit development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MNFGGFLDNN SGGGGARIVA DIPFNHNNSS SNNDNKNNMP TGAISQPRLL PQSLAKNMFN 60 SPGLSLALQT GMEGQSEVTR MAENYEGNNS VGRRSREEEP DSRSGSDNLE GASGDEQDAT 120 DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM 180 KTQLERHENS ILRQENDKLR AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR 240 LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GSNGFGGMSN VPTTLPLAPP 300 DFGVGISNSL PVVPSTRQST GIERSLERSM YLELALAAME ELVKMAQTDE PLWFRSIEGG 360 REILNHEEYI RTFTPCIGMR PNSFISEASR ETGMVIINSL ALVETLMDSN KWAEMFPCLI 420 ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS 480 IDTIRETSGA PTFPNSRRLP SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM 540 GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS 600 TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL 660 RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSSMLILQET CIDAAGALVV 720 YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV 780 AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALQCE S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16029 | 0.0 | flower| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g091630.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ222185 | 0.0 | Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234657.2 | 0.0 | cutin deficient 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A3Q7EKE6 | 0.0 | A0A3Q7EKE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g091630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1626 | 24 | 65 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g091630.2.1 |
Entrez Gene | 100316889 |