PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g088820.2.1

Common Name

LOC101251619

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 330aa MW: 37287.6 Da PI: 9.8143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g088820.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.9	1.3e-18	37	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf..erspkqCkekwenlnkrykkikegekkr....tsessstcpyfdq 84 +W+++e+ aLi+a+r+++ +lr+g+l++++W+ev++ + ++ ++ ++++qC++k+e+l+kry+++ +++ + + s +++f++ Solyc01g088820.2.1 37 CWSHDETIALIDAYRDKWYSLRKGNLRANHWQEVADDVgSRCPVdpPKTAVQCRHKMEKLRKRYRAEIQRAAPYggprSHRYCSAWVHFKR 127 8***********************************7444554589***************99988764321113444456777777 PP trihelix 85 le 86 ++ Solyc01g088820.2.1 128 MD 129 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.3E-20	36	131	No hit	No description
PROSITE profile	PS50090	6.202	38	97	IPR017877	Myb-like domain
SMART	SM00595	1.5E-11	45	136	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MATFSPSTRD FSTNPSQILS SSNVTVAVPS RRLPPPCWSH DETIALIDAY RDKWYSLRKG 60 NLRANHWQEV ADDVGSRCPV DPPKTAVQCR HKMEKLRKRY RAEIQRAAPY GGPRSHRYCS 120 AWVHFKRMDM MERGPNAVSP PPSEDEADED VEDYHQNGVK LVGDLYGNNV HAGNRSSFQG 180 VVSNGGGGFR IRIPGMPGLA PPMAKPYSRF EEARVETPSN FGSSQMFRDG FVKKADLGKR 240 VVGEGVREKK KEDPMVEMVA AIKVLGDGFV RMERMKMDAA RELERMRMEM EMKRTEMILE 300 SQQRVVEAFA QALSEKKYKK AKRMPTPEC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g088820.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240868	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-35c8 map 1, complete sequence
GenBank	AC246175	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34o13 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229727.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A3Q7EJF0	0.0	A0A3Q7EJF0_SOLLC; Uncharacterized protein
STRING	Solyc01g088820.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-64	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc01g088820.2.1
Entrez Gene	101251619

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]