PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g014910.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 316aa    MW: 35377.4 Da    PI: 6.7861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g014910.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-06105147854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          Er R ++i   fe+Lr l+P+     s K +  +i  +Av++I +L
  Solyc01g014910.1.1 105 TERERTKKIGILFETLRALIPNI----SAKADECTIIDEAVNHILKL 147
                         6*********************6....69***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5697147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-12100158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-7102149No hitNo description
SMARTSM003530.0028105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.91E-6233292No hitNo description
Gene3DG3DSA:3.30.70.2604.4E-4235294No hitNo description
CDDcd048738.59E-4237279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNGGGESNHV FPWEIDDVWS YLNMNDNQIG SGAMFEGDMM PDPLRFDTYH PLTVVNEVVG  60
SSTNVAKRRS PPNSKKNGKK IVEPKSSADG VGYREGLEHE IHIWTERERT KKIGILFETL  120
RALIPNISAK ADECTIIDEA VNHILKLKNT FEKLKQKKLD DLQEYNIRLM SSQKFPDVGN  180
SWENYLGDQG TTSNSSFIKP KIHGATPLMV NNNIPTSFMT WSSPDMILNV CGKDAHISVC  240
CPKKLGLFTF ICYVLGKHNI EIVSAQVSSD QSRTMFMIQA HAKCGNDIAQ FSEAPTVEEI  300
YKQVAIRIMS FETPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g014910.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228808.30.0transcription factor bHLH95-like
TrEMBLA0A3Q7EBD90.0A0A3Q7EBD9_SOLLC; Uncharacterized protein
STRINGSolyc01g014910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-28bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]