PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc01g006930.2.1 | ||||||||
Common Name | LOC101257995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 312aa MW: 34242.8 Da PI: 10.055 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 87.9 | 1.4e-27 | 143 | 197 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR++Rak e kk k rkpylh SRh hAlrRpRg+gGrF Solyc01g006930.2.1 143 GPIFVNAKQYHGILRRRKTRAKEME-KKA-LKPRKPYLHLSRHLHALRRPRGCGGRF 197 69*******************9666.555.6*************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.5E-30 | 140 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.034 | 141 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-20 | 144 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.8E-23 | 144 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-20 | 174 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MNTTIFSKGN ERVVQNQSVG TLCSAPWWSN GFMSQSVAYA EPFGQLKSAS VEQQPKGNAT 60 EFTISSGDCK SSANGQKLPN IQAASSVRAA NMDYRGHFEL GFGQSLIYAK HPYGEQCIGL 120 FSAYAPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK TRAKEMEKKA LKPRKPYLHL 180 SRHLHALRRP RGCGGRFLNT RNMNGTMKAG KTNNMFKTGD VQNFYPTGSQ NSEVLQSDSS 240 NLSSPKETSG SRFFDSSGVA NMYSSDNLDP FLFQNLRPPV QAIPDMMNTG HGIFVSGKWV 300 CTADSCCNLK V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-16 | 142 | 198 | 2 | 60 | HAPB protein |
4g92_A | 2e-16 | 142 | 198 | 2 | 60 | HAPB protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.15857 | 0.0 | fruit| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc01g006930.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC245817 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228658.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A3Q7ERL1 | 0.0 | A0A3Q7ERL1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g006930.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 | Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06510.2 | 5e-35 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc01g006930.2.1 |
Entrez Gene | 101257995 |
Publications ? help Back to Top | |||
---|---|---|---|
|