PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g006930.2.1
Common NameLOC101257995
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 312aa    MW: 34242.8 Da    PI: 10.055
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g006930.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA87.91.4e-27143197258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hAlrRpRg+gGrF
  Solyc01g006930.2.1 143 GPIFVNAKQYHGILRRRKTRAKEME-KKA-LKPRKPYLHLSRHLHALRRPRGCGGRF 197
                         69*******************9666.555.6*************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.5E-30140200IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.034141200IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-20144166IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-23144197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-20174197IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNTTIFSKGN ERVVQNQSVG TLCSAPWWSN GFMSQSVAYA EPFGQLKSAS VEQQPKGNAT  60
EFTISSGDCK SSANGQKLPN IQAASSVRAA NMDYRGHFEL GFGQSLIYAK HPYGEQCIGL  120
FSAYAPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK TRAKEMEKKA LKPRKPYLHL  180
SRHLHALRRP RGCGGRFLNT RNMNGTMKAG KTNNMFKTGD VQNFYPTGSQ NSEVLQSDSS  240
NLSSPKETSG SRFFDSSGVA NMYSSDNLDP FLFQNLRPPV QAIPDMMNTG HGIFVSGKWV  300
CTADSCCNLK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-16142198260HAPB protein
4g92_A2e-16142198260HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.158570.0fruit| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g006930.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458170.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228658.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A3Q7ERL10.0A0A3Q7ERL1_SOLLC; Uncharacterized protein
STRINGSolyc01g006930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-35nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]