PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G237800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 314aa MW: 34306.5 Da PI: 4.8652 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 286 | 309 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F ++ L++H ++ H Sobic.010G237800.2.p 286 YACKSCSKTFYSSVGLETHCKVkH 309 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.198 | 286 | 313 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 288 | 309 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MPMVNGIFEY WGVVVRPGAT VKCDPGEFYC HVSQIALQDS KGNEDVRVFV KADGKKFLIG 60 TLSVDKYPQY TTSLVFEKEF ELLHTSKTST ISALGYKFRH CNRKYDSETS TEEGDESNEE 120 VPQAIPLYPN ADDDKSKESK CGVEKPAATE SSKSKVSLEE AKVPDKHKAD VGGDDNDESD 180 EDVDSEDGES GDDESSSDED DGESSNEDDD EDSPKSTKRN NRPAETPLKT PPGKKARITT 240 PSMGKKSVSD DAKRSNHVHV ATPYPSSKQV KTARSIIDNS KQSTGYACKS CSKTFYSSVG 300 LETHCKVKHS ACK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G237800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035254 | 1e-131 | BT035254.1 Zea mays full-length cDNA clone ZM_BFb0051D01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437480.2 | 0.0 | histone deacetylase HDT2 isoform X1 | ||||
TrEMBL | A0A194YL67 | 0.0 | A0A194YL67_SORBI; Uncharacterized protein | ||||
STRING | Sb10g027913.1 | 1e-167 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 | Representative plant | OGRP1053 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 2e-19 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G237800.2.p |