PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G193800.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 278aa    MW: 28655.7 Da    PI: 9.7836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G193800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-07630226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          k ++C  f+ t  C++G++C+F H 
  Sobic.010G193800.4.p  6 KSKPCTKFFSTAGCPFGASCHFLHN 30
                          7789********************7 PP
2zf-CCCH20.21.1e-067297227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          kt+ C+ +     Ck G++C+FaHg+
  Sobic.010G193800.4.p 72 KTRMCNKYNTAEGCKWGSKCHFAHGE 97
                          89**********************96 PP
3zf-CCCH36.77e-12243268127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC +f + G C +GdrC+FaHg+
  Sobic.010G193800.4.p 243 FKTKLCENFNK-GSCTFGDRCHFAHGE 268
                           69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
PROSITE profilePS5010312.915432IPR000571Zinc finger, CCCH-type
SMARTSM003560.3431IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-8630IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6632IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5630IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1466102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5587098IPR000571Zinc finger, CCCH-type
SMARTSM003561.47097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-870101IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.15E-14141212IPR004088K Homology domain, type 1
SMARTSM003227.8E-11142212IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.6E-16143211IPR004088K Homology domain, type 1
PROSITE profilePS5008415.2143207IPR004088K Homology domain, type 1
CDDcd001051.82E-14145207No hitNo description
PfamPF000131.4E-11145208IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.2E-17240274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9242273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131242269IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7242268IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9243268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGVGSKSKPC TKFFSTAGCP FGASCHFLHN FPGGYQAVSK MTNLGGPPVP APPGRMPMGP  60
GGPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPLQMDNSM GAPPPMGPGP  120
NGHFMPPPMP HLDMVPPSTF GASATAKISV DASLAGAIIG KGGANTKHIS RVTGAKLAIR  180
DNEADPNHKN IELEGTFDQI KHASAMVTEL IVRISGKAPG PQAKNNPGGR GPGSHAGGPG  240
SNFKTKLCEN FNKGSCTFGD RCHFAHGESE LRKPAAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.14460.0callus| leaf| pollen| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G193800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305248.10.0zinc finger CCCH domain-containing protein 44-like isoform X1
SwissprotQ69XQ31e-156C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A194YL980.0A0A194YL98_SORBI; Uncharacterized protein
STRINGSb10g024330.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-51C3H family protein