PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G052500.1.p | ||||||||
Common Name | Sb10g004570, SORBIDRAFT_10g004570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 397aa MW: 44234.6 Da PI: 6.8876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.5e-07 | 150 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg++F+++ +L+rH r H Sobic.010G052500.1.p 150 YSCAVCGRRFPTRPDLTRHFRQlH 173 99*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-5 | 148 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 149 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.9E-4 | 150 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.256 | 150 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 173 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 2.14E-8 | 216 | 300 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.8E-4 | 225 | 289 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MPLALSFLHL PPNTAPFHSF QVHRTHHSHL HLSLRTRRAS ATVAAAEAEN PSASADVEMV 60 RGRDGVWTAR SPTVVVLWDL DNKPPRGPPF PAATALIGAA SLLGRVVSVS AFANRHAFSH 120 LPVWVTAERR DRRALDRAER AGVVAPSVPY SCAVCGRRFP TRPDLTRHFR QLHERERNKK 180 LSRLRSLKGK KRQKFRERFI SGNTKYEDAA RELLTPKVGY GLASELRRAG VHVRTVSDKP 240 QAADHALKRQ VKHSVACGVD WVVLVSDDSD FTDTVRNARA ADLRTVVVGD GCRALGKVAD 300 IWLPWDRVEN GEVDEEMLRS CTFAEYREDQ EDERGEQFIG DWDASAFDDV VDDIVGMRTN 360 LLGATTISAF ADEDITDGIF DSMFWSSDDE EEDGYL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1514 | 0.0 | embryo| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G052500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967761 | 0.0 | EU967761.1 Zea mays clone 305881 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436551.1 | 0.0 | uncharacterized protein LOC8070886 | ||||
Refseq | XP_021305770.1 | 0.0 | uncharacterized protein LOC8070886 | ||||
TrEMBL | C5Z4W6 | 0.0 | C5Z4W6_SORBI; Uncharacterized protein | ||||
STRING | Sb10g004570.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9806 | 32 | 34 | Representative plant | OGRP3048 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 6e-92 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G052500.1.p |
Entrez Gene | 8070886 |