PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G000100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 646aa MW: 70108.4 Da PI: 6.5097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.4 | 2e-47 | 30 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp+GfrF+Ptdeelv +yLk+k++g+ + i++vd+ +ePw+Lp k +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatg Sobic.010G000100.1.p 30 LPVGFRFRPTDEELVRHYLKPKIAGHAHADLLLIPDVDLSACEPWELPaKaLIRSGDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATG 118 79*************************888788**************95346777889******************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kd+ + s+ g+l+g+kktLvf++grap+g++t W+mheyr Sobic.010G000100.1.p 119 KDRLIRSRrAGTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 160 ******9877888***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-53 | 27 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.867 | 30 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-26 | 31 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MPSTSISSAS AAGKGGSKAM QPPPQLPAAL PVGFRFRPTD EELVRHYLKP KIAGHAHADL 60 LLIPDVDLSA CEPWELPAKA LIRSGDPEWF FFAPLDRKYP GGHRSNRSTA AGYWKATGKD 120 RLIRSRRAGT LIGVKKTLVF HRGRAPRGHR TAWIMHEYRT AEPQLQQGQN GSFVLYRLFN 180 KNEGESEASD AADSPSTSSP AIAPAVKAEN LSQPASAKMS HLLATVSSNE PTSNQGDDHL 240 LDVLSQLPDL QREHKFDGFP TITSPMRPYT DHPFLGNAGE QDLSVYIDSI IAHQDLEDLL 300 ASPCLADMVE QATVNVEPHP TSLPILDNSS NSKRLAENSR GKVGSETLLL IKGTDDTGAA 360 ASCSATKILQ ADKDNINHHT GAQSNLASNA SAQVSHFYNQ YQLQSAFIPE TEPPNSGALC 420 SAASLTPYPQ HLFNGMVAPA RIDISDSDVF NGLQGWAAEP SKDPHQGNAP RRIRLVHSIQ 480 RASVIEPVLT SHLEGEDEAG LCYSTDSSST NNNEDYANVF SQSMAGEAMH IQGGGVIPTQ 540 VVSSTEITEK LQDFTLDEGT LLHGELHHGG NLKQRHKQEH TEETSQDVRE GMQQSVHVTG 600 VAVPSLRRQR ESARIGSVVR LLFLALVVIL VFVGLWKCSS YKLFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 16 | 181 | 8 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G000100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953263 | 0.0 | EU953263.1 Zea mays clone 1394620 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436309.2 | 0.0 | NAC domain-containing protein 69 isoform X1 | ||||
TrEMBL | C5Z212 | 0.0 | C5Z212_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G163914_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 | Representative plant | OGRP12749 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-60 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G000100.1.p |