PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G233100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 30261.7 Da PI: 8.0767 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.8e-19 | 127 | 178 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + k +r++lg+f ta+eAa a+++a+++++g+ Sobic.009G233100.1.p 127 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATADEAALAYDKAALRMRGP 178 69*******.**********332...34**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.3E-31 | 127 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 127 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 127 | 187 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-35 | 127 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 127 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 128 | 139 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.00E-27 | 128 | 185 | No hit | No description |
PRINTS | PR00367 | 2.9E-10 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MAIGAPPDDS RQRPAADQAA NILENVWATI IAGSATPASS STAASSEVGE ERPPEAILER 60 LPSLGRWISM GAEEWDELLL SGTAALASGA AASGELLAAS PANQEADRQH GNRATSSSKA 120 AAAACKSYRG VRRRPWGKFA AEIRDTRRKG ARVWLGTFAT ADEAALAYDK AALRMRGPRA 180 HLNFPLDVVQ REMQAAAAGD GCAGTTRVLR RKRRRSNHDA ATADGTRSHG SVAAGTGRDP 240 TMVSFACAKK DQGTPPSIVQ ERSISDPGAV IEFEDIGGEY WDYLFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 123 | 188 | 1 | 66 | ATERF1 |
3gcc_A | 4e-27 | 123 | 188 | 1 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 214 | RKRRR |
2 | 210 | 215 | RKRRRS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G233100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU685412 | 0.0 | KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304105.1 | 0.0 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A1B6PA26 | 0.0 | A0A1B6PA26_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G021790_P01 | 1e-132 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G233100.1.p |