PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G214700.1.p
Common NameSb09g027030, SORBIDRAFT_09g027030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 402aa    MW: 40978 Da    PI: 6.1774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G214700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-05299339954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+r+ +++  L++l+P        +++ a++L +A  Y+k L
  Sobic.009G214700.1.p 299 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 339
                           599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.52E-10281344No hitNo description
PROSITE profilePS5088814.215290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-12296350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9296350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-11296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEDFGGWSMQ YAADPCLPSR PSDDDGLLGA FLGGGFDLRS DHGGLSDLPS SHQVQNLMPC  60
HGGASLSVSD GFMGLDTADM LASVTGALDD GLLDTFAYGS DVVAAAAEEP AQPTASSNAF  120
SSGYSSTTGG NYGNISSGES NTCSGGGGGH DTEVASPCAL SRSSALPQAT AALASKRKLG  180
GKYPAVAATT STEAQVAAPW RGAKRDSATS SSSTSITFAA GHGDHHAAGG SSSSAGGGYE  240
YEPDSEALAQ VKEMIYRAAA MRPVHQLVCG AGTEPAPSSQ SKPRRKNVRI SSDPQTVAAR  300
LRRERVSERL RVLQRLVPGG SRMDTASMLD EAASYLKFLK TQVKALERAN PSNGGYHNSS  360
LLPQSYTGTG SLGVGGGGTG VANGRDGAID GYVNSNRNMH L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286KPRRKN
2299304RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.182386e-58embryo| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G214700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663021e-172BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440159.10.0transcription factor PIF1
RefseqXP_021304008.10.0transcription factor PIF1
RefseqXP_021304009.10.0transcription factor PIF1
RefseqXP_021304010.10.0transcription factor PIF1
SwissprotA0A0P0WQ901e-65LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLC5YUV20.0C5YUV2_SORBI; Uncharacterized protein
STRINGSb09g027030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-28bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]