PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G212500.1.p
Common NameSb09g026800, SORBIDRAFT_09g026800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 444aa    MW: 47868.4 Da    PI: 8.4162
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G212500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.9e-1686145155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Sobic.009G212500.1.p  86 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 145
                           789******************888855666447*************************98 PP
2AP251.13.3e-16188239155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Sobic.009G212500.1.p 188 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 239
                           89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1286145IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1686154IPR016177DNA-binding domain
SMARTSM003801.1E-2487159IPR001471AP2/ERF domain
PROSITE profilePS5103219.80987153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1587154IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-17188248IPR016177DNA-binding domain
CDDcd000181.10E-23188247No hitNo description
PfamPF008474.2E-11188239IPR001471AP2/ERF domain
SMARTSM003801.7E-26189253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17189247IPR001471AP2/ERF domain
PROSITE profilePS5103218.979189247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MESSGMMMVK SEIESCGYPG PSSSTAPAAG VVIGGSATTE RGEGGHHHHH HQVVVRRRRR  60
EPPLLAPIAG GGIGKPLPSI TVKRSSRFRG VSRHRWTGRF EAHLWDKNSW NPTQRKKGKQ  120
VYLGAYDEEE AAARAYDLAA LKYWGPTTYT NFPVMDYEKE LKIMENLTKE EYLASLRRKS  180
SGFSRGVSKY RGVARHHQNG RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYKGV  240
NAVTNFDLRS YITWLKPSGA PAAFNPEAAL LMQAAPAEQL LHPAETAQML PRVGNPFLLD  300
HGAAPPGSSG GGGQDASMSS MVSPGAGGGM RRRGSSTALS LLLKSSMFRQ LVEKNSDAEE  360
GVRDREDAAA AAAAAHPAGP GDAYEYHNFF QGEAPPDMCD LFSSGGGGDH ARNAGFHGEI  420
AACYDDGEGL DGWNGFGNMS SLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G212500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLC5YUI80.0C5YUI8_SORBI; Uncharacterized protein
STRINGSb09g026800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-80AP2 family protein