PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G187900.1.p | ||||||||
Common Name | Sb09g024720, SORBIDRAFT_09g024720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 345aa MW: 36652.9 Da PI: 6.6749 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.4e-05 | 237 | 274 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYI+ L Sobic.009G187900.1.p 237 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 274 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.131 | 225 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-12 | 235 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.05E-6 | 235 | 279 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-9 | 235 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0067 | 236 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MADEWWSSAR TAAAADAGSP CSTAPATDQV DAAESAAATT TNSINFRPTL HVVDAAAPPS 60 FLTDPPHHMD NWTQAYMGGR APTATTSFNF NALLQLHGDA GRHFLLGQHL HAADGAAPVA 120 AESQSASSSL YAGGNQPYSS YGGDVPAAAL MTKPTFRQQE FFDSSTRNFG DMPAAPPMTT 180 TKPLLLQALE QKAFKSHKEP EQDACSSATR SVPSSPAPAK KKPRVATPSP LPTFKVRKEK 240 LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IRFLHDQVAS LSSPYLRCGR PVQQLQQQQD 300 GGEAKEDLRS RGLCLVPVAS TTYAVATSET APEFWPPTFG GTLQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G187900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069546 | 1e-110 | BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440027.1 | 0.0 | transcription factor UNE12 isoform X2 | ||||
Refseq | XP_021302886.1 | 0.0 | transcription factor UNE12 isoform X2 | ||||
TrEMBL | C5Z0F8 | 0.0 | C5Z0F8_SORBI; Uncharacterized protein | ||||
STRING | Sb09g024720.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 | Representative plant | OGRP19976 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G187900.1.p |
Entrez Gene | 8067473 |