PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G155050.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 523aa    MW: 57223 Da    PI: 6.3071
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G155050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79.2e-12199228433
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                            k err+++NReAAr+sR+RKka++++Le+
  Sobic.009G155050.1.p 199 AKTERRLAQNREAARKSRLRKKAYVQQLET 228
                           699*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-4196272IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232198240IPR004827Basic-leucine zipper domain
PfamPF001708.6E-9199229IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-7200241No hitNo description
SuperFamilySSF579594.02E-7200242No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF141442.1E-28280355IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAQGEESSWC MTSSDHGRAA SFSQAIACGS QRRASAAQPA NFLELQPAAA PYYFGELEEA  60
LIHGTRTSVD HGMIGSDVDT ECKTAGYLAA RPPTLEIFPS WPMSHLQQPY SGNSHSVGST  120
TDSSSGQNSM PQTELVSPGS MRADSGQRQE VLMVTVDDYN YEQGLGAAAT TAQIFQQHAA  180
GQDKGKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL  240
HGARSQGLFP GGGGAPGDLS SGAVIFDMEY ARWLEDDTKH MTELQAVLQP QIIDANLGAI  300
VEECMRHYDE LFHLRAMLAR SDVFHLMTGL WATTAERCFL WMGGFRPSEI LKMLIPQLDP  360
LTEPQLLGMY NLQRSSEQTE EALGQGLQQL HQSLADAVGA SPLSDGANVA NYTALMALAL  420
DRLDTLESFY RQADSLRQQT LHQMRRILTT RQTARCFLSI SEYHRRLRAL SSVWASRPPT  480
ESSVAAAAAA AGAENVSPAT GTTSEQAALR PYNHQSQQFP GF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G155050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688470.0EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302617.10.0transcription factor TGAL5 isoform X1
RefseqXP_021302618.10.0transcription factor TGAL5 isoform X1
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A1Z5R2W60.0A0A1Z5R2W6_SORBI; Uncharacterized protein
STRINGGRMZM2G000842_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Representative plantOGRP1069649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-107bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]