PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G093000.1.p | ||||||||
Common Name | Sb09g011040, SORBIDRAFT_09g011040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 27158.1 Da PI: 9.0033 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.2e-11 | 5 | 99 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 fkvl ++++s+ l+++++ a + + +e+ t ++ ++ g +W vk+ + +++ +l++GW eF +g+ g fvv+ ++ Sobic.009G093000.1.p 5 FKVL--LHTSSSHKLRISNELA-GCfdtgegE-GAPEP-TAIVVSPFGTVWPVKV--GQDGDGAFLGRGWAEFLPVHGVGLGWFVVLWHE- 87 4666..7888899999999999.555999842.34455.8999************..999999*************************65. PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++l+vk+f++ Sobic.009G093000.1.p 88 -GGGTLTVKMFDT 99 .58999****997 PP | |||||||
2 | B3 | 34.2 | 4.4e-11 | 115 | 188 | 16 | 90 |
EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +lp +f++ + ++ ++s+t ++ ++ g+ W++++ ++ ++++++t+ W++F + +g+ g++++++++g++ Sobic.009G093000.1.p 115 KRLPARFVKGYiTKEWQNSQTAIIVSPLGKCWQFEF--KNDQSGIFFTGRWSQFLDFHGISKGEVLLLRYEGNMVS 188 589*****9998445557889***************..999999**************************998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.938 | 2 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-9 | 5 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0041 | 5 | 100 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.09E-9 | 5 | 98 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-13 | 5 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-11 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0011 | 102 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-9 | 115 | 187 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-14 | 116 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-13 | 116 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.90E-9 | 116 | 193 | No hit | No description |
PROSITE profile | PS50863 | 9.291 | 117 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVKQFKVLLH TSSSHKLRIS NELAGCFDTG EGEGAPEPTA IVVSPFGTVW PVKVGQDGDG 60 AFLGRGWAEF LPVHGVGLGW FVVLWHEGGG TLTVKMFDTS LCIKEFIAPA AEAAKRLPAR 120 FVKGYITKEW QNSQTAIIVS PLGKCWQFEF KNDQSGIFFT GRWSQFLDFH GISKGEVLLL 180 RYEGNMVSKF KAFGLNGCQK VFKNQNAEIK QNTEKQQETP SPIRKCNSSD EKSKNQNAGI 240 HLSEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G093000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447504.2 | 1e-111 | putative B3 domain-containing protein Os04g0346900 | ||||
Swissprot | Q7XS75 | 2e-67 | Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | C5YVQ7 | 0.0 | C5YVQ7_SORBI; Uncharacterized protein | ||||
STRING | Sb09g011040.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 | Representative plant | OGRP10106 | 4 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G093000.1.p |
Entrez Gene | 8058335 |