PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G174650.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 420aa    MW: 45472.5 Da    PI: 9.7201
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G174650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.53.5e-31253309158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++p+YVNaKQy++I++RR +Rak+e+e++l  k+rkpylheSRh+hAlrRpRgsgGrF
  Sobic.008G174650.1.p 253 EAPIYVNAKQYDAIMRRRRARAKAERENRL-VKARKPYLHESRHQHALRRPRGSGGRF 309
                           57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-35251312IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.881252312IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-23255277IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27255309IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860257277IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-23286309IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MFPFLPFLSS SILNPHCFNQ SPLNKPFFLR SNSFSQFHSL SPLLQPASSY SSSWVVVRLG  60
TVPSPTSLVN VASTSTSKTS KMMSFRSTTH DGFVGHAAVN GAGAPVPWWA GAPMLCGEPL  120
GLGRPVVAAF SPEDHCRDGR FQVLQGPPLD PLVPSLKAPV AHQQQTEKGL SAELLNLSVA  180
HQGKGKKGSE HSATVALQSP FAIYNGRFEL GLGQSMISAD NSYADQHYGL ISPYPMGATP  240
GGRMLIPLNM PTEAPIYVNA KQYDAIMRRR RARAKAEREN RLVKARKPYL HESRHQHALR  300
RPRGSGGRFL NTKKESDGKD AGGGSKATFS NPLMRQVASP SSEIQHSDLG NPSSVSSLSG  360
SEVSSMYDRE DMDHYHSFDH LRTPFFTPLT SIMDGDHGVV GNPFKWAAAS EVCCDLLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-18253310260HAPB protein
4g92_A4e-18253310260HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.12530.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G174650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338110.0BT033811.1 Zea mays full-length cDNA clone ZM_BFc0155E11 mRNA, complete cds.
GenBankBT0678270.0BT067827.1 Zea mays full-length cDNA clone ZM_BFc0168D11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301381.10.0uncharacterized protein LOC8071483 isoform X1
TrEMBLA0A1Z5R7700.0A0A1Z5R770_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-26nuclear factor Y, subunit A10