PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G168100.1.p

Common Name

Sb08g021350, SORBIDRAFT_08g021350

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HD-ZIP

Protein Properties

Length: 858aa MW: 93133.3 Da PI: 6.8391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G168100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	29	86	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L + + +++ +q+kvWFqNrR +ek+ Sobic.008G168100.1.p 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 86 6789****************************************************97 PP
2	START	164.7	6.7e-52	178	385	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l vi +g Sobic.008G168100.1.p 178 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRASWYRDCRHVDILHVIPTGng 265 68999***************************************************.8888888888**************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l++++++al++l+ Rdf+++Ry+ l +g++vi+++S+++ + p+ +++++Rae+lpSg+li+p+++g+s + +v+hvdl+ Sobic.008G168100.1.p 266 GTIELIYMQTYALTTLAEpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLN 354 *********998866************************9999999******************************* PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqc 204 +++++++lr+l++s + ++k++ a+l++ + Sobic.008G168100.1.p 355 ASSVPEVLRPLYESPKILAQKMTAAALRHIR 385 ************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-18	14	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.143	23	87	IPR001356	Homeobox domain
SMART	SM00389	1.3E-14	25	91	IPR001356	Homeobox domain
CDD	cd00086	1.61E-15	28	88	No hit	No description
SuperFamily	SSF46689	3.89E-16	28	89	IPR009057	Homeodomain-like
Pfam	PF00046	9.7E-16	29	86	IPR001356	Homeobox domain
CDD	cd14686	4.98E-6	80	119	No hit	No description
PROSITE profile	PS50848	27.642	168	368	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.5E-23	176	360	IPR023393	START-like domain
SMART	SM00234	9.0E-43	177	387	IPR002913	START domain
Pfam	PF01852	9.3E-50	178	385	IPR002913	START domain
SuperFamily	SSF55961	1.1E-36	178	388	No hit	No description
Pfam	PF08670	2.7E-40	714	856	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MAMVASRERR LSPPGGAAQG APQVDAGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR 60 DCPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE NDRLQKQVSR 120 LVFDNGYMKN RLHSPSVATT DTSCESVVTS GHHNQQQNPA VLHPPQRDAN NPAGLLAIAE 180 ETLAEFMSKA TGTAVNWVQM VGMKPGPDSV GIIAVSHNCS GVAARACGLV SLEPTKVAEI 240 LKDRASWYRD CRHVDILHVI PTGNGGTIEL IYMQTYALTT LAEPRDFWTL RYTSGLDDGS 300 LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCDG GGSMIYIVDH VDLNASSVPE 360 VLRPLYESPK ILAQKMTAAA LRHIRQIAHE SSGEMPYGVG RQPAVLRTFS QRLSRGFNDA 420 VSGFPDDGWS SLLSSDGAED ITISINSSPN KLIGSHVSPS PFFSAMGGGI MCAKASMLLQ 480 NVPPAILVRF LREHRSEWAD PGVDAYSAAS LRANPYAVPG LRAGGFMGNQ VILPLARTLE 540 HEECLEVIRL EGHGFSHEEV LMSRDMFLLQ LCSGVDENAP GACAQLVFAP IDESFADDAP 600 LLPSGFRVIP LDAKTDVPSA TRTLDLASAL EVGSGGGLRA LSDSSGTCTT RSVLTIAFQF 660 SFENHLRDSV AAMARQYVRG VMASVQRVAM AIAPSRLGPH IELKHPPGSP EALALATWIG 720 RSYRAHTGTE IRWSDTEGAD SPLMPFWKHS DAILCCSLKP AFTLKFANSA GFDILETTLV 780 NIQDLPLEAV LDDDGQKALF AQLSKIMQQG LAYLPGGVCR SSMGRQASYE QAVAWKVVGD 840 DGAPQCLALM LVNWTFI*

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MAMVASRERR LSPPGGAAQG APQVDAGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR  60
DCPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE NDRLQKQVSR  120
LVFDNGYMKN RLHSPSVATT DTSCESVVTS GHHNQQQNPA VLHPPQRDAN NPAGLLAIAE  180
ETLAEFMSKA TGTAVNWVQM VGMKPGPDSV GIIAVSHNCS GVAARACGLV SLEPTKVAEI  240
LKDRASWYRD CRHVDILHVI PTGNGGTIEL IYMQTYALTT LAEPRDFWTL RYTSGLDDGS  300
LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCDG GGSMIYIVDH VDLNASSVPE  360
VLRPLYESPK ILAQKMTAAA LRHIRQIAHE SSGEMPYGVG RQPAVLRTFS QRLSRGFNDA  420
VSGFPDDGWS SLLSSDGAED ITISINSSPN KLIGSHVSPS PFFSAMGGGI MCAKASMLLQ  480
NVPPAILVRF LREHRSEWAD PGVDAYSAAS LRANPYAVPG LRAGGFMGNQ VILPLARTLE  540
HEECLEVIRL EGHGFSHEEV LMSRDMFLLQ LCSGVDENAP GACAQLVFAP IDESFADDAP  600
LLPSGFRVIP LDAKTDVPSA TRTLDLASAL EVGSGGGLRA LSDSSGTCTT RSVLTIAFQF  660
SFENHLRDSV AAMARQYVRG VMASVQRVAM AIAPSRLGPH IELKHPPGSP EALALATWIG  720
RSYRAHTGTE IRWSDTEGAD SPLMPFWKHS DAILCCSLKP AFTLKFANSA GFDILETTLV  780
NIQDLPLEAV LDDDGQKALF AQLSKIMQQG LAYLPGGVCR SSMGRQASYE QAVAWKVVGD  840
DGAPQCLALM LVNWTFI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G168100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067483	0.0	BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443548.1	0.0	homeobox-leucine zipper protein HOX33
Swissprot	A2ZMN9	0.0	HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
Swissprot	Q2QM96	0.0	HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBL	C5YRY3	0.0	C5YRY3_SORBI; Uncharacterized protein
STRING	Sb08g021350.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197
Representative plant	OGRP651	16	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G168100.1.p
Entrez Gene	8084396

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Luan W, et al. Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice. Sci China Life Sci, 2013. 56(12): p. 1113-23 [PMID:24302292]