PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G154200.1.p
Common NameSb08g020330, SORBIDRAFT_08g020330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 338aa    MW: 35379 Da    PI: 6.5837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G154200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.46.8e-15180227355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ah   E+rRR++iN+++ +L++l+P +      K + a++L ++++Y+ksLq
  Sobic.008G154200.1.p 180 EAHRLTEKRRRHKINERLKTLQQLVPGC-----SKSNQASTLDQTIHYMKSLQ 227
                           589************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-17174239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.113177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17180234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-15180231No hitNo description
PfamPF000101.3E-12180227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNYPHAAAAA GPWLTCCDND NAGEAAAAMM PTMGESGSFF ADVVADYSRN ELFERVWEQE  60
GQAGGGASGS MQPAISCLWS PRFSSKSPDV RFDPPSEDEM TAWLGATVKG EELAGNVDDG  120
GRRLIADDGG RDAVPATMGT SRDTDKEEKV PTTTEGVMMD NKVMRKAPAG GPSRKSHHGE  180
AHRLTEKRRR HKINERLKTL QQLVPGCSKS NQASTLDQTI HYMKSLQHQV QAMSVGLASP  240
AVYPVVQPQG MPLGTPVAMP FPAAHPPVVL GGHPPSTTMV PFGATMLQLP HYAGAAVMVP  300
AAAAMAPLYP APAAAPTSTA VAPGDAMAAN HLRGSSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G154200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.11e-138transcription factor APG
TrEMBLA0A1B6PDV60.0A0A1B6PDV6_SORBI; Uncharacterized protein
STRINGSb08g020330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-21phytochrome interacting factor 3-like 5