PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G153900.1.p
Common NameSb08g020290, SORBIDRAFT_08g020290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 353aa    MW: 36985.7 Da    PI: 7.1099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G153900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24e-15196241555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR++iN+++ +L++l+P +      K + a++L ++++Y+ksLq
  Sobic.008G153900.1.p 196 HNLTEKRRRHKINERLKTLQKLVPGC-----SKSNQASTLDQTIHYMKSLQ 241
                           9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-15186245No hitNo description
PROSITE profilePS5088816.101191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-18195258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18196248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-13196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNKNDPDAAA AAGGGGPWCC DNQGGNAGEA AAAATVPTTG ESGSFFADVV ADYSTDELFE  60
LVWEQEGKDG GGASSGSMHP AVSRLRSPKF TKPPDVPFDD PPLEDEMAAW LAGTVVKGDE  120
VLAFNDDDGG SRRPTSDDGR DVVPAEKGTS STTAMGKKEK VVPTTTMEGM MMANKEMRKV  180
PAAVGSSRRS HHGEGHNLTE KRRRHKINER LKTLQKLVPG CSKSNQASTL DQTIHYMKSL  240
QQQVQAMSVG LAAPAVYPVV QPQCVPPGTP VAMPFPAAHP MVLGGHPPST TMVPFGATMV  300
QLPHYPAAAV MMPLYPAAAP TSTVATPGDA MSASHLHGSS SRSSSKEKRK RQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G153900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.11e-146transcription factor APG
TrEMBLA0A1Z5R6W90.0A0A1Z5R6W9_SORBI; Uncharacterized protein
STRINGSb08g020290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-22phytochrome interacting factor 3-like 5