PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G153700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 167aa MW: 18043 Da PI: 10.5254 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.1 | 1.2e-16 | 37 | 85 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn E+rRR++i +++ +Lr+l+P + + K + a+iL +++++IksLq Sobic.008G153700.1.p 37 ETHNLTEKRRRRKIDDKLKTLRQLVPGC----DDKSNQASILDQTIQHIKSLQ 85 58*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-18 | 33 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-19 | 33 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.145 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-15 | 37 | 89 | No hit | No description |
Pfam | PF00010 | 2.3E-14 | 37 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MDCGMAQVVG MATTDHEYAG ISRKKATGGA RRSHPAETHN LTEKRRRRKI DDKLKTLRQL 60 VPGCDDKSNQ ASILDQTIQH IKSLQQQIQV QPKAISLGCD AIKPPAVYPV VLPQGTAVAA 120 AGELLPPAAA LPPAVLAMAA RGHVRPGLAP LHHLRRWCLS VPFFQW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 48 | KRRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G153700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442458.1 | 6e-27 | transcription factor APG | ||||
TrEMBL | A0A1B6PDZ4 | 1e-118 | A0A1B6PDZ4_SORBI; Uncharacterized protein | ||||
STRING | Sb08g020275.1 | 2e-91 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 2e-12 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G153700.1.p |